Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_019529.1
Length=111506
Score E
Sequences producing significant alignments: (Bits) Value
seq732 152 4e-32
>seq732
Length=24842
Score = 152 bits (168), Expect = 4e-32
Identities = 279/404 (69%), Gaps = 10/404 (2%)
Strand=Plus/Plus
Query 28562 GGAGTAACTGACAAAGGTTACTTAACAAACTCATTCCACTTAGACGTACTGAAGAAGGTA 28621
|| || || || |||||||||| || ||| |||||| | || || |||||||||
Sbjct 1049 GGCGTGACCGATAAAGGTTACTACACCAACAGTTTCCACCTCGATGTGGAGAAGAAGGTG 1108
Query 28622 AACCCGTATGATAAAATCGACTTTGAAGCGCAATTCATCCCATACAGCTCCGGTGGTCAT 28681
|||||||| || || |||||||||||||||| | | || |||||||
Sbjct 1109 AACCCGTACGACAAGATCGACTTTGAAGCGCCTTACCCGCCGCTGGCGAACGGTGGTTTC 1168
Query 28682 ATCTGCTACGGGGAATTCCCTAATATGCGCCACAATATTGAAGCACTCGAAAATGTGTGG 28741
|| |||||||| || | || || || | ||||| | | || || ||| |||| |||
Sbjct 1169 ATTTGCTACGGCGAGTATCCAAACATTCAGCACAACCTGAAGGCGCTGGAAGATGTCTGG 1228
Query 28742 GATTACGCCTA-CACCAAAGTCCCATACTACGGCACCAACACACCAATTGATGAATGCTA 28800
|||||| ||| || || || || || ||||||||||| ||||| |||||||| |||||
Sbjct 1229 GATTACAGCTATCAGCAT-GTACCGTATTACGGCACCAATACACCGATTGATGAGTGCTA 1287
Query 28801 TAGCTGCGGATTCAAAGGTGAGTTCAATTGTACAAGCAAAGGTTTTGAGTGTCCTAACTG 28860
|| || || | ||||||||| | || || |||||||| || || || || ||
Sbjct 1288 CGAGTGTGGCTTTACCGGTGAGTTCGAGTGCACCAGCAAAGGCTTCACTTGCCCGAAATG 1347
Query 28861 CGGAAACCACGAC----CCAGAGAAATGCTCTGTCACCAGACGAGTGTGTGGCTACCTAG 28916
|| ||||| ||| || | | || || || || | || ||||| || || |||
Sbjct 1348 TGGTAACCATGACGCCTCCCGTG---TG-TCGGTGACTCGCCGCGTGTGCGGATATTTAG 1403
Query 28917 GTAATCCTGGTACTCGTCCATTCAATGCAGGTAAACAGTCAGAA 28960
||| || | | | |||||||| || || ||||| ||| ||||
Sbjct 1404 GTAGCCCGGATGCACGTCCATTTAACGCCGGTAAGCAGGAAGAA 1447
Score = 107 bits (118), Expect = 1e-18
Identities = 235/352 (67%), Gaps = 0/352 (0%)
Strand=Plus/Plus
Query 27667 CGATGCTTGTCAGACTCTAGAATACCAAGTAAATACTATTTACTCAACTAATGGTCAGAC 27726
|||||| | ||| | || || ||| ||||||| || | || | | || ||||||||
Sbjct 157 CGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGAC 216
Query 27727 TCCGTTCTTGACATTTGGATTCGGTCTAGGTACTTCTTGGGAAGCTAAACTAGTTCAGAA 27786
||||| | || ||||| || ||||| || || |||||| | || ||||| |
Sbjct 217 GCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGGGAATCGCGCCTGATTCAGGA 276
Query 27787 AGGTATTCTACAGAATCGTATTGCTGGTCTAGGTAAAGAAGGTACTACTCCGGTATTCCC 27846
| ||| || | || ||||| || || || |||||| | ||| ||| |||| |||||
Sbjct 277 ATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTTCCC 336
Query 27847 TAAGCTAGTATTTGGTCTCAAAGATGGGGTAAACCTGAAGCCAGAAGACCCTAACTACGA 27906
|| || || |||| | ||||| | |||| || || || || ||||||||
Sbjct 337 GAAACTGGTGTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGAACTACGA 396
Query 27907 TATTAAGCAGCTTGCATTAGAATGTGCTACTGTTCGCATGTATCCAGACATACTTAACTA 27966
|| || ||||| || | || || || | ||||||||||| || || || |||||
Sbjct 397 CATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATCCTGAACTA 456
Query 27967 CGATAAGACTGTTGAAATTACAGGCGGATATAAAGCACCTATGGGCTGTCGC 28018
|||| || || || | || || | |||| | || |||||||| |||
Sbjct 457 CGATCAGGTAGTGAAAGTCACCGGTTCGTTTAAAACCCCGATGGGCTGCCGC 508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356676332982772
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |