Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_019529.1 Length=111506 Score E Sequences producing significant alignments: (Bits) Value seq732 152 4e-32 >seq732 Length=24842 Score = 152 bits (168), Expect = 4e-32 Identities = 279/404 (69%), Gaps = 10/404 (2%) Strand=Plus/Plus Query 28562 GGAGTAACTGACAAAGGTTACTTAACAAACTCATTCCACTTAGACGTACTGAAGAAGGTA 28621 || || || || |||||||||| || ||| |||||| | || || ||||||||| Sbjct 1049 GGCGTGACCGATAAAGGTTACTACACCAACAGTTTCCACCTCGATGTGGAGAAGAAGGTG 1108 Query 28622 AACCCGTATGATAAAATCGACTTTGAAGCGCAATTCATCCCATACAGCTCCGGTGGTCAT 28681 |||||||| || || |||||||||||||||| | | || ||||||| Sbjct 1109 AACCCGTACGACAAGATCGACTTTGAAGCGCCTTACCCGCCGCTGGCGAACGGTGGTTTC 1168 Query 28682 ATCTGCTACGGGGAATTCCCTAATATGCGCCACAATATTGAAGCACTCGAAAATGTGTGG 28741 || |||||||| || | || || || | ||||| | | || || ||| |||| ||| Sbjct 1169 ATTTGCTACGGCGAGTATCCAAACATTCAGCACAACCTGAAGGCGCTGGAAGATGTCTGG 1228 Query 28742 GATTACGCCTA-CACCAAAGTCCCATACTACGGCACCAACACACCAATTGATGAATGCTA 28800 |||||| ||| || || || || || ||||||||||| ||||| |||||||| ||||| Sbjct 1229 GATTACAGCTATCAGCAT-GTACCGTATTACGGCACCAATACACCGATTGATGAGTGCTA 1287 Query 28801 TAGCTGCGGATTCAAAGGTGAGTTCAATTGTACAAGCAAAGGTTTTGAGTGTCCTAACTG 28860 || || || | ||||||||| | || || |||||||| || || || || || Sbjct 1288 CGAGTGTGGCTTTACCGGTGAGTTCGAGTGCACCAGCAAAGGCTTCACTTGCCCGAAATG 1347 Query 28861 CGGAAACCACGAC----CCAGAGAAATGCTCTGTCACCAGACGAGTGTGTGGCTACCTAG 28916 || ||||| ||| || | | || || || || | || ||||| || || ||| Sbjct 1348 TGGTAACCATGACGCCTCCCGTG---TG-TCGGTGACTCGCCGCGTGTGCGGATATTTAG 1403 Query 28917 GTAATCCTGGTACTCGTCCATTCAATGCAGGTAAACAGTCAGAA 28960 ||| || | | | |||||||| || || ||||| ||| |||| Sbjct 1404 GTAGCCCGGATGCACGTCCATTTAACGCCGGTAAGCAGGAAGAA 1447 Score = 107 bits (118), Expect = 1e-18 Identities = 235/352 (67%), Gaps = 0/352 (0%) Strand=Plus/Plus Query 27667 CGATGCTTGTCAGACTCTAGAATACCAAGTAAATACTATTTACTCAACTAATGGTCAGAC 27726 |||||| | ||| | || || ||| ||||||| || | || | | || |||||||| Sbjct 157 CGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGAC 216 Query 27727 TCCGTTCTTGACATTTGGATTCGGTCTAGGTACTTCTTGGGAAGCTAAACTAGTTCAGAA 27786 ||||| | || ||||| || ||||| || || |||||| | || ||||| | Sbjct 217 GCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGGGAATCGCGCCTGATTCAGGA 276 Query 27787 AGGTATTCTACAGAATCGTATTGCTGGTCTAGGTAAAGAAGGTACTACTCCGGTATTCCC 27846 | ||| || | || ||||| || || || |||||| | ||| ||| |||| ||||| Sbjct 277 ATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTTCCC 336 Query 27847 TAAGCTAGTATTTGGTCTCAAAGATGGGGTAAACCTGAAGCCAGAAGACCCTAACTACGA 27906 || || || |||| | ||||| | |||| || || || || |||||||| Sbjct 337 GAAACTGGTGTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGAACTACGA 396 Query 27907 TATTAAGCAGCTTGCATTAGAATGTGCTACTGTTCGCATGTATCCAGACATACTTAACTA 27966 || || ||||| || | || || || | ||||||||||| || || || ||||| Sbjct 397 CATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATCCTGAACTA 456 Query 27967 CGATAAGACTGTTGAAATTACAGGCGGATATAAAGCACCTATGGGCTGTCGC 28018 |||| || || || | || || | |||| | || |||||||| ||| Sbjct 457 CGATCAGGTAGTGAAAGTCACCGGTTCGTTTAAAACCCCGATGGGCTGCCGC 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356676332982772