Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq1870 122 1e-22 seq1599 87.8 3e-12 seq544 87.8 3e-12 >seq1870 Length=4832 Score = 122 bits (134), Expect = 1e-22 Identities = 128/165 (78%), Gaps = 10/165 (6%) Strand=Plus/Minus Query 198611 TTGCGCTGTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCACTGGTTCG 198670 ||| || |||||||||||||| ||||||| | ||| ||| | |||||||||||||| Sbjct 764 TTGAGCCGTTAGCTCAGTTGG-TAGAGCATCTGACTTTTAATCAGAGGGTCACTGGTTCG 706 Query 198671 AATCCAGTACGGCGCACCA-------CGGGATGTGGTGAAATTGGCAGACACACTAGATT 198723 | |||||||||| || | |||| ||||| | ||||||||||| ||||||||| Sbjct 705 AGCCCAGTACGGCTCATAAGTATATGCGGG-TGTGGCGGAATTGGCAGACGCACTAGATT 647 Query 198724 TAGGTTCTAGCGCCATA-GGCGTGACGGTTCGAGTCCGTCCATCC 198767 |||| ||||||||| || |||||| ||||| ||||| | || || Sbjct 646 TAGGATCTAGCGCCTTACGGCGTGGGGGTTCAAGTCCCTTCACCC 602 >seq1599 Length=6876 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/149 (74%), Gaps = 8/149 (5%) Strand=Plus/Plus Query 198618 GTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCACTGGTTCGAATCCAG 198677 |||||||||||||| ||||||| | ||| ||| | ||||||||||||||| |||| Sbjct 766 GTTAGCTCAGTTGG-TAGAGCATCTGACTTTTAATCAGAGGGTCACTGGTTCGAGCCCAG 824 Query 198678 TACGGCGCACC-----ACG-GGATGTGGTGAAATTGGCAGACACACTAGATTTAGGTTCT 198731 ||||| || | | || | ||| | ||||||||||| ||| ||||||||| ||| Sbjct 825 TACGGGTCATATTAATATGCGGGTTTGGCGGAATTGGCAGACGCACCAGATTTAGGATCT 884 Query 198732 AGCGC-CATAGGCGTGACGGTTCGAGTCC 198759 |||| | |||||| ||||| ||||| Sbjct 885 GGCGCTTAACGGCGTGGGGGTTCAAGTCC 913 >seq544 Length=37415 Score = 87.8 bits (96), Expect = 3e-12 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 199779 TTTCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTC 199837 |||||| || |||||||| |||||||||| ||||||||||||||| ||||| |||||| Sbjct 1120 TTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTC 1061 Query 199838 GAGTCCTGTATCACCGACCACTT 199860 || |||| | || ||||||| || Sbjct 1060 GAATCCTCTCTCGCCGACCAATT 1038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741411081693280