Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_019538.1
Length=231743
Score E
Sequences producing significant alignments: (Bits) Value
seq1870 122 1e-22
seq1599 87.8 3e-12
seq544 87.8 3e-12
>seq1870
Length=4832
Score = 122 bits (134), Expect = 1e-22
Identities = 128/165 (78%), Gaps = 10/165 (6%)
Strand=Plus/Minus
Query 198611 TTGCGCTGTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCACTGGTTCG 198670
||| || |||||||||||||| ||||||| | ||| ||| | ||||||||||||||
Sbjct 764 TTGAGCCGTTAGCTCAGTTGG-TAGAGCATCTGACTTTTAATCAGAGGGTCACTGGTTCG 706
Query 198671 AATCCAGTACGGCGCACCA-------CGGGATGTGGTGAAATTGGCAGACACACTAGATT 198723
| |||||||||| || | |||| ||||| | ||||||||||| |||||||||
Sbjct 705 AGCCCAGTACGGCTCATAAGTATATGCGGG-TGTGGCGGAATTGGCAGACGCACTAGATT 647
Query 198724 TAGGTTCTAGCGCCATA-GGCGTGACGGTTCGAGTCCGTCCATCC 198767
|||| ||||||||| || |||||| ||||| ||||| | || ||
Sbjct 646 TAGGATCTAGCGCCTTACGGCGTGGGGGTTCAAGTCCCTTCACCC 602
>seq1599
Length=6876
Score = 87.8 bits (96), Expect = 3e-12
Identities = 111/149 (74%), Gaps = 8/149 (5%)
Strand=Plus/Plus
Query 198618 GTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCACTGGTTCGAATCCAG 198677
|||||||||||||| ||||||| | ||| ||| | ||||||||||||||| ||||
Sbjct 766 GTTAGCTCAGTTGG-TAGAGCATCTGACTTTTAATCAGAGGGTCACTGGTTCGAGCCCAG 824
Query 198678 TACGGCGCACC-----ACG-GGATGTGGTGAAATTGGCAGACACACTAGATTTAGGTTCT 198731
||||| || | | || | ||| | ||||||||||| ||| ||||||||| |||
Sbjct 825 TACGGGTCATATTAATATGCGGGTTTGGCGGAATTGGCAGACGCACCAGATTTAGGATCT 884
Query 198732 AGCGC-CATAGGCGTGACGGTTCGAGTCC 198759
|||| | |||||| ||||| |||||
Sbjct 885 GGCGCTTAACGGCGTGGGGGTTCAAGTCC 913
>seq544
Length=37415
Score = 87.8 bits (96), Expect = 3e-12
Identities = 70/83 (84%), Gaps = 1/83 (1%)
Strand=Plus/Minus
Query 199779 TTTCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTC 199837
|||||| || |||||||| |||||||||| ||||||||||||||| ||||| ||||||
Sbjct 1120 TTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTC 1061
Query 199838 GAGTCCTGTATCACCGACCACTT 199860
|| |||| | || ||||||| ||
Sbjct 1060 GAATCCTCTCTCGCCGACCAATT 1038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741411081693280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |