Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_019705.1 Length=38759 Score E Sequences producing significant alignments: (Bits) Value seq1066 93.3 1e-14 >seq1066 Length=13853 Score = 93.3 bits (102), Expect = 1e-14 Identities = 184/268 (69%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 32647 ATGACAAGCATTGAAATCGCTGAGTTGGTAGAAAGCCGCCATAGCAATGTAAAAGTATCC 32706 ||||| ||| |||||||||| ||| |||| | ||| | || ||||||| | | |||| Sbjct 9942 ATGACCAGCGTTGAAATCGCAGAGCTGGTTGGAAGTCAACACGGCAATGTCAGAATATCA 9883 Query 32707 ATAGATAGATTGGTGAAACGTGGCGTTATCAAGCCTCCTGCATTGCAGCACACTAACATA 32766 ||||| | ||| ||||| || || || | | ||||||| |||| | | | | Sbjct 9882 ATAGAGCGTCTGGCAAAACGCGGGGTGATTCAACTTCCTGCAATGCAAAAAGTTGAGAAC 9823 Query 32767 -ATCAATGATTTATGTGTTATTACCGGGAAGCGTGATTTC-TACGTCTTCGAGGGCGAAC 32824 | |||| ||||| | | || | | | | || | ||||| ||||||| Sbjct 9822 GAACAATCATTTA---GCCAAAACAA--ATTCACAAACGCATATATTTTCGAAGGCGAAC 9768 Query 32825 AAGGAAAGCGAGACAGCATTATTGTCGTCGCCCAATTGTCGCCAGAGTTCACCGCTCGCC 32884 |||| || || |||||||| ||||||||||| ||| | | || || ||||| || |||| Sbjct 9767 AAGGCAAACGCGACAGCATCATTGTCGTCGCACAACTTTGCCCGGAATTCACTGCCCGCC 9708 Query 32885 TTGTTGACCGTTGGCGAGAGCTTGAAGA 32912 | || || |||||||| || || ||||| Sbjct 9707 TGGTAGATCGTTGGCGCGAACTGGAAGA 9680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123901084869912