Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_019705.1
Length=38759
Score E
Sequences producing significant alignments: (Bits) Value
seq1066 93.3 1e-14
>seq1066
Length=13853
Score = 93.3 bits (102), Expect = 1e-14
Identities = 184/268 (69%), Gaps = 7/268 (3%)
Strand=Plus/Minus
Query 32647 ATGACAAGCATTGAAATCGCTGAGTTGGTAGAAAGCCGCCATAGCAATGTAAAAGTATCC 32706
||||| ||| |||||||||| ||| |||| | ||| | || ||||||| | | ||||
Sbjct 9942 ATGACCAGCGTTGAAATCGCAGAGCTGGTTGGAAGTCAACACGGCAATGTCAGAATATCA 9883
Query 32707 ATAGATAGATTGGTGAAACGTGGCGTTATCAAGCCTCCTGCATTGCAGCACACTAACATA 32766
||||| | ||| ||||| || || || | | ||||||| |||| | | | |
Sbjct 9882 ATAGAGCGTCTGGCAAAACGCGGGGTGATTCAACTTCCTGCAATGCAAAAAGTTGAGAAC 9823
Query 32767 -ATCAATGATTTATGTGTTATTACCGGGAAGCGTGATTTC-TACGTCTTCGAGGGCGAAC 32824
| |||| ||||| | | || | | | | || | ||||| |||||||
Sbjct 9822 GAACAATCATTTA---GCCAAAACAA--ATTCACAAACGCATATATTTTCGAAGGCGAAC 9768
Query 32825 AAGGAAAGCGAGACAGCATTATTGTCGTCGCCCAATTGTCGCCAGAGTTCACCGCTCGCC 32884
|||| || || |||||||| ||||||||||| ||| | | || || ||||| || ||||
Sbjct 9767 AAGGCAAACGCGACAGCATCATTGTCGTCGCACAACTTTGCCCGGAATTCACTGCCCGCC 9708
Query 32885 TTGTTGACCGTTGGCGAGAGCTTGAAGA 32912
| || || |||||||| || || |||||
Sbjct 9707 TGGTAGATCGTTGGCGCGAACTGGAAGA 9680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123901084869912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |