Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_019709.1
Length=41567
Score E
Sequences producing significant alignments: (Bits) Value
seq1103 89.7 1e-13
seq1066 87.8 5e-13
>seq1103
Length=13301
Score = 89.7 bits (98), Expect = 1e-13
Identities = 95/124 (77%), Gaps = 5/124 (4%)
Strand=Plus/Minus
Query 11339 TTTTTGCTTTTGCCAAAGGAGCGGGTGTGTTTGCAGAGGCTGGACCTGAAGCCATTATGC 11398
||||||||||||| ||||| ||||||||| | | || || ||||||||||||||| |||
Sbjct 11724 TTTTTGCTTTTGCAAAAGGCGCGGGTGTGATGGGGGAAGCGGGACCTGAAGCCATTCTGC 11665
Query 11399 CGCTTACCCGTGCTGCTGATGGTTCGCTTGGCGTTCGGGCTGTTGGCACTGGTGGTGGTC 11458
| || || | |||||||||| ||| || ||| ||| | | ||||||||| ||
Sbjct 11664 CACTGCGTCGCGGTGCTGATGGTAAGCTGGGGGTTGTGGCGGAT---ACTGGTGGT--TC 11610
Query 11459 AGGC 11462
||||
Sbjct 11609 AGGC 11606
>seq1066
Length=13853
Score = 87.8 bits (96), Expect = 5e-13
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 35212 TTCGAAGGCGAAAAAGGTAAGCGCGATAGCATTATTGTCGTTGCCCAGTTGTCGCCGGAA 35271
|||||||||||| |||| || ||||| ||||| |||||||| || || | | ||||||
Sbjct 9780 TTCGAAGGCGAACAAGGCAAACGCGACAGCATCATTGTCGTCGCACAACTTTGCCCGGAA 9721
Query 35272 TTCACCGCTCGCCTTGTTGACCGCTGGCGAGAGCTTGAAGA 35312
||||| || ||||| || || || ||||| || || |||||
Sbjct 9720 TTCACTGCCCGCCTGGTAGATCGTTGGCGCGAACTGGAAGA 9680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132886241408088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |