Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_019767.1
Length=40155
Score E
Sequences producing significant alignments: (Bits) Value
seq1103 89.7 1e-13
seq1066 80.6 7e-11
>seq1103
Length=13301
Score = 89.7 bits (98), Expect = 1e-13
Identities = 95/124 (77%), Gaps = 5/124 (4%)
Strand=Plus/Minus
Query 11329 TTTTTGCTTTTGCCAAAGGAGCGGGTGTGTTTGCAGAGGCTGGACCTGAAGCCATTATGC 11388
||||||||||||| ||||| ||||||||| | | || || ||||||||||||||| |||
Sbjct 11724 TTTTTGCTTTTGCAAAAGGCGCGGGTGTGATGGGGGAAGCGGGACCTGAAGCCATTCTGC 11665
Query 11389 CGCTTACCCGTGCTGCTGATGGTTCGCTTGGCGTTCGGGCTGTTGGCACTGGTGGTGGTC 11448
| || || | |||||||||| ||| || ||| ||| | | ||||||||| ||
Sbjct 11664 CACTGCGTCGCGGTGCTGATGGTAAGCTGGGGGTTGTGGCGGAT---ACTGGTGGT--TC 11610
Query 11449 AGGC 11452
||||
Sbjct 11609 AGGC 11606
>seq1066
Length=13853
Score = 80.6 bits (88), Expect = 7e-11
Identities = 82/107 (77%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 31610 TGAAGACCGGAATCGAAGAACTTGACGCTATCACCGGAGGGATGAACGCGGAAGACCTGG 31669
||| |||||| || || ||||| ||||| | || || || ||| | | | |||||||
Sbjct 4169 TGATGACCGGTATTGATGAACTGGACGCAAAAACAGGCGGCATGGAGCCCGGCGACCTGG 4110
Query 31670 TGATTATCGCCGCTCGTCCTGGTATGGGGAAAACCGAACTGGCGCTG 31716
| |||| || ||||||||| ||||||||||||||||| ||||||
Sbjct 4109 TATTTATTGCGGCTCGTCCTTCGATGGGGAAAACCGAACTTGCGCTG 4063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 128368064402424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |