Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_019769.1
Length=38964
Score E
Sequences producing significant alignments: (Bits) Value
seq1066 86.0 2e-12
>seq1066
Length=13853
Score = 86.0 bits (94), Expect = 2e-12
Identities = 183/271 (68%), Gaps = 13/271 (5%)
Strand=Plus/Minus
Query 31970 ATGACAAGCATTGAAATCGCTGAGTTGGTAGAAAGCCGCCATAGCAATGTAAAAGTATCC 32029
||||| ||| |||||||||| ||| |||| | ||| | || ||||||| | | ||||
Sbjct 9942 ATGACCAGCGTTGAAATCGCAGAGCTGGTTGGAAGTCAACACGGCAATGTCAGAATATCA 9883
Query 32030 ATAGATAGATTGGTGAAACGTGGCGTTATCAAGCCTCCTGCATTGCAGCACACTAACATA 32089
||||| | ||| ||||| || || || | | ||||||| |||| | | | |
Sbjct 9882 ATAGAGCGTCTGGCAAAACGCGGGGTGATTCAACTTCCTGCAATGCAAAAAGTTGAGAAC 9823
Query 32090 -ATCAATGATTTAGGTGTTA----TTACCGGGAAGCGTGATTTCTACGTCTTCGAGGGCG 32144
| |||| |||||| | || | || || || | ||||| ||||
Sbjct 9822 GAACAATCATTTAGCCAAAACAAATTCAC---AAACGCA-----TATATTTTCGAAGGCG 9771
Query 32145 AACAAGGAAAGCGAGACAGCATTATTGTCGTCGCCCAGTTGTCGCCAGAGTTCACCGCTC 32204
||||||| || || |||||||| ||||||||||| || | | || || ||||| || |
Sbjct 9770 AACAAGGCAAACGCGACAGCATCATTGTCGTCGCACAACTTTGCCCGGAATTCACTGCCC 9711
Query 32205 GCCTTGTTGACCGCTGGCGAGAGCTTGAAGA 32235
|||| || || || ||||| || || |||||
Sbjct 9710 GCCTGGTAGATCGTTGGCGCGAACTGGAAGA 9680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 124557052494672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |