Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_019914.1 Length=40071 Score E Sequences producing significant alignments: (Bits) Value seq729 105 2e-18 >seq729 Length=25020 Score = 105 bits (116), Expect = 2e-18 Identities = 213/311 (68%), Gaps = 14/311 (5%) Strand=Plus/Minus Query 10804 TGATTAACAGAGTCGTATTAGTAGGTCGTTTAACTAAAGATCCTGAATTTAGAAAAACTC 10863 ||||||| | || ||| |||| ||||||||||| || |||||||| || | | || Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCG 1265 Query 10864 AAAGTGGGGTTGATGTTGCAACTTTTACACTAGCAGTTAACCGTACTTTCACGAATGCGC 10923 || ||| | |||||| || ||||| |||| || || |||| ||| |||||| | Sbjct 1264 CAAATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAAT---C 1208 Query 10924 AAGGCG---AACGTGAAGCAGATTTTATCAATATAGTCGTATTCAGAAAACAAGCACACA 10980 || ||| | || || || |||||||||||| || | | | ||| |||| | | Sbjct 1207 AAAGCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGA-A 1149 Query 10981 ACGTTAACAACTATTTAT-CG---AAAGGAAAACTAGCAGGTGTTGATGGTCGCATCCAA 11036 || || | ||| |||| || ||||||| || |||||| ||| || |||||| Sbjct 1148 ACTTT---AGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAA 1092 Query 11037 TCACGCAGTTATGAAAATCAAGAAGGTCGTCGAATATTTGTTACTGAAGTAGTTGCAGAT 11096 || | | |||||||||||| |||| | || | | ||| || ||||| ||||| || Sbjct 1091 ACAAGAAATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAG 1032 Query 11097 AGTGTTCAATT 11107 | | | ||||| Sbjct 1031 AATTTCCAATT 1021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128099277668376