Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq544 84.2 2e-11 >seq544 Length=37415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 211/313 (67%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 39736 GCTCGCGCATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACC 39795 || || || ||||| || ||| | |||||||| || | || | || || ||||| ||| Sbjct 10627 GCGCGAGCGTGATCTTCCACATACAGCCAGTCACGGATTTGCTGCCCGTTGCCATATACC 10686 Query 39796 GGAATCTCTTTATTCGTCAAGATACTTGTG-ATGATTTTTGGGATCAGCTTTTCTGGATG 39854 || | | |||| || || | ||| | || || |||||||| ||||| ||| Sbjct 10687 GGCAGCGATTTACCCGCCA-GCGCGTTGAGGATCATCAGCGGGATCAGTTTTTCCGGAAA 10745 Query 39855 TTGATAAGGCCCAAAGTTATTGGAGCAGTTGGTTATCACAACAGGCAAATCGTAGGTGCG 39914 || ||||| || ||||||| ||||||||||| || | |||| | ||||||| || Sbjct 10746 GTGGTAAGGACCGTAGTTATTCGAGCAGTTGGTGATAAGCGTCGGCAGACCGTAGGTCCG 10805 Query 39915 GTGCCAAGCTTTCACAAGATGGTCAGATGCT-GCCTTAGACGCACTGTACGGGCTTGAAG 39973 |||| || ||| |||||||| | |||| || || ||||| || ||||| | Sbjct 10806 CAGCCAGGCGCGCACCAGATGGTC-GCTGCTGGCTTTTGACGCGGAATAAGGGCTGCTCG 10864 Query 39974 GGGCATAAGCTGTCTCTTCGGTAAAGGGAAC-GCCAGAGTCTGCCATATCGCCGTACACT 40032 | ||||| | || |||||| ||| | | || | || || || || || ||| Sbjct 10865 GCGCATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTG-CAGGTCACCATATACT 10923 Query 40033 TCGTCTGTGGAGA 40045 ||||| ||||||| Sbjct 10924 TCGTCGGTGGAGA 10936 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 38636 GCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGTCTGCACGAAT 38695 ||||| ||||||| ||| |||||||| || || || | || || | ||||| || || Sbjct 9481 GCAATCTCTTCCAGGCAGGCAATCTTAAAGCCCTGGCGTTTTTCCACCGTCTGTACAAAG 9540 Query 38696 TGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGTCCG 38755 | ||||| ||||| ||| |||| || || || || ||||| | |||||| || ||| Sbjct 9541 GTGCTGGCTTCAATCAGGCTGTCGTGAGTGCCGGTATCCAGCCAGGCAAATCCGCGCCCG 9600 Query 38756 AGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGATCTCC 38815 || | ||| || | || | | || ||||| | | ||||| || |||||| Sbjct 9601 AGCAGTTCAACGGTCAGGTTGCCCGCCTCGAGGTACATCTGGTTGATGGAGGTAATCTCC 9660 Query 38816 AGTTCTCCACGCGCGGAAGG 38835 ||||| |||||| | || || Sbjct 9661 AGTTCACCACGCTCCGACGG 9680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472605846850720