Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_020079.1
Length=147737
Score E
Sequences producing significant alignments: (Bits) Value
seq544 84.2 2e-11
>seq544
Length=37415
Score = 84.2 bits (92), Expect = 2e-11
Identities = 211/313 (67%), Gaps = 6/313 (2%)
Strand=Plus/Plus
Query 39736 GCTCGCGCATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACC 39795
|| || || ||||| || ||| | |||||||| || | || | || || ||||| |||
Sbjct 10627 GCGCGAGCGTGATCTTCCACATACAGCCAGTCACGGATTTGCTGCCCGTTGCCATATACC 10686
Query 39796 GGAATCTCTTTATTCGTCAAGATACTTGTG-ATGATTTTTGGGATCAGCTTTTCTGGATG 39854
|| | | |||| || || | ||| | || || |||||||| ||||| |||
Sbjct 10687 GGCAGCGATTTACCCGCCA-GCGCGTTGAGGATCATCAGCGGGATCAGTTTTTCCGGAAA 10745
Query 39855 TTGATAAGGCCCAAAGTTATTGGAGCAGTTGGTTATCACAACAGGCAAATCGTAGGTGCG 39914
|| ||||| || ||||||| ||||||||||| || | |||| | ||||||| ||
Sbjct 10746 GTGGTAAGGACCGTAGTTATTCGAGCAGTTGGTGATAAGCGTCGGCAGACCGTAGGTCCG 10805
Query 39915 GTGCCAAGCTTTCACAAGATGGTCAGATGCT-GCCTTAGACGCACTGTACGGGCTTGAAG 39973
|||| || ||| |||||||| | |||| || || ||||| || ||||| |
Sbjct 10806 CAGCCAGGCGCGCACCAGATGGTC-GCTGCTGGCTTTTGACGCGGAATAAGGGCTGCTCG 10864
Query 39974 GGGCATAAGCTGTCTCTTCGGTAAAGGGAAC-GCCAGAGTCTGCCATATCGCCGTACACT 40032
| ||||| | || |||||| ||| | | || | || || || || || |||
Sbjct 10865 GCGCATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTG-CAGGTCACCATATACT 10923
Query 40033 TCGTCTGTGGAGA 40045
||||| |||||||
Sbjct 10924 TCGTCGGTGGAGA 10936
Score = 82.4 bits (90), Expect = 7e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 38636 GCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGTCTGCACGAAT 38695
||||| ||||||| ||| |||||||| || || || | || || | ||||| || ||
Sbjct 9481 GCAATCTCTTCCAGGCAGGCAATCTTAAAGCCCTGGCGTTTTTCCACCGTCTGTACAAAG 9540
Query 38696 TGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGTCCG 38755
| ||||| ||||| ||| |||| || || || || ||||| | |||||| || |||
Sbjct 9541 GTGCTGGCTTCAATCAGGCTGTCGTGAGTGCCGGTATCCAGCCAGGCAAATCCGCGCCCG 9600
Query 38756 AGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGATCTCC 38815
|| | ||| || | || | | || ||||| | | ||||| || ||||||
Sbjct 9601 AGCAGTTCAACGGTCAGGTTGCCCGCCTCGAGGTACATCTGGTTGATGGAGGTAATCTCC 9660
Query 38816 AGTTCTCCACGCGCGGAAGG 38835
||||| |||||| | || ||
Sbjct 9661 AGTTCACCACGCTCCGACGG 9680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472605846850720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |