Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq732 147 2e-30 >seq732 Length=24842 Score = 147 bits (162), Expect = 2e-30 Identities = 466/717 (65%), Gaps = 39/717 (5%) Strand=Plus/Plus Query 152618 CGATGCGTTCCAGTCATACGAATATGAAGTAAACACCTTACATACTGCAAATGGACAGAC 152677 |||||| |||||||| || || |||||||||||| | || || || || || ||||| Sbjct 157 CGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGAC 216 Query 152678 GCCTTTTGTCACAATCACTTTCGGTATGGGTACTGGTTGGCGCGAA---CGCATGATCCA 152734 ||| ||||| || | ||| ||| |||| || | ||| ||| ||| |||| || Sbjct 217 GCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGG---GAATCGCGCCTGATTCA 273 Query 152735 GAAAGCGATTCTGAAAAACCGTATTCGTGGACTGGGTAAAAAAGGCATTACCCCTGTATT 152794 | || | || ||| |||||||| || || |||||||| | | || | || || Sbjct 274 GGAATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTT 333 Query 152795 CCCAAAACTGGTTATGTTT---ATGGAAAAAGGGATTAACCTTAATCCGGAAGACAGAAA 152851 ||| |||||||| |||| || | || | |||| ||| | || || Sbjct 334 CCCGAAACTGGT---GTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGAA 390 Query 152852 CTATGATATTAAGAAATTGGCCCTGGAATGTGCTTCAAAGCGTATGTATCCGGATATTAT 152911 ||| || || || | |||| ||||| || || ||||| |||||||||||||| | Sbjct 391 CTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATCCT 450 Query 152912 TAGCGCGGCTAATAACCGTCGTATT-ACTGGCTCTAGCATTCCTGTAT--CTCCTATGGG 152968 | | || | | | ||| | | | | | | ||| | || | || ||||| Sbjct 451 GAAC-----TACGATCAG--GTAGTGAAAGTCACCGG--TTCGTTTAAAACCCCGATGGG 501 Query 152969 TTGTCGTAGTTTCCTTAGCGTGTGGAATGATGAGCACGGTAATGAAATTCTTGATGGACG 153028 || || || ||||| |||||||| | |||| |||| | | || | ||||| || Sbjct 502 CTGCCGCAGCTTCCTCGGCGTGTGGGAAAATGAAAACGGCGAGCAGATCCACGATGGTCG 561 Query 153029 TAATAACCTGGGCGTTGTGACAATCAACCTTCCTCGTATTGCGATTGAAGCCGAAGCACA 153088 ||| ||||| ||||| | | | ||||| || |||||||| | ||||| ||| Sbjct 562 TAACAACCTCGGCGTGATCAGCCTGAACCTGCCGCGTATTGCTCTGGAAGCAAAAGGC-- 619 Query 153089 GGAAGATGAAGACGCGCATGATGCATTTTGGCGTATCCTTGATGAACGTCTGGAACTGTG 153148 ||||||| | | || ||| | || ||||||||||||| ||| Sbjct 620 ----GATGAAGCCACC---------TTCTGGAAGCTGCTGGATGAACGTCTGGTGCTGGC 666 Query 153149 CTTTGAAGCCCTGATGACTCGTATTGATAGTCTCAGAGGTGTTAAAGCCAGTGTAGCCCC 153208 | | || |||||||| ||||| | | ||||| ||| || ||||| | || ||||| Sbjct 667 ACGTAAGGCGCTGATGACCCGTATCGCTCGTCTCGAAGGCGTGAAAGCGCGCGTGGCCCC 726 Query 153209 GATCCTTTATACAGAAGGTGCGTTTGGTGTACGGTTGAAACCCGATGATGAAATTCTGGA 153268 |||||| |||| |||||||| | ||| || || | || | || ||||| || || Sbjct 727 GATCCTCTATATGGAAGGTGCTTGTGGCGTGCGTCTCAATGCTGACGATGATGTTTCTGA 786 Query 153269 ACTGTTCAAAAATGGGCGTAGTTCTATCAGTCTGGGATACATCGGATTGCATGAAAC 153325 | | |||||||| || ||| ||||| ||||| |||||||| | || ||||| Sbjct 787 AATCTTCAAAAACGGTCGTGCGTCTATTTCGCTGGGTTACATCGGCATCCACGAAAC 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557964612232480