Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq195 206 2e-47 seq223 89.7 3e-12 seq69 89.7 3e-12 >seq195 Length=92702 Score = 206 bits (228), Expect = 2e-47 Identities = 378/549 (69%), Gaps = 10/549 (2%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| |||||||| || ||||| |||||||| || | || | || |||| || || | Sbjct 11987 TTGGAATTGATTTGGGTACTACGTACAGTTGCGTTGGCGTATTTCAGCATGGAAAGGTGG 11928 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | ||||| ||||| ||||| || || |||| || || |||||| ||||||| || | Sbjct 11927 AGATAATAGCCAACGACCAGGGCAACCGAACTACGCCGAGCTATGTTGCTTTTACGGACA 11868 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || || || || ||||| || || |||| | || | ||||| || || Sbjct 11867 CGGAGAGGCTGATCGGCGATGCCGCCAAGAATCAGGTGGCTTTAAATCCCCACAACACCG 11808 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 |||| || || || || |||| || || | ||||| || |||| || ||||| | Sbjct 11807 TTTTCGACGCGAAGCGACTGATCGGGCGACGATACGATGACTCCGCTGTGCAGTCTGACA 11748 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAAGCAAT 474630 || ||||||||||| |||||||||| || ||| || || ||| | || || | ||| Sbjct 11747 TGAAGCATTGGCCTTTCAAGGTGATAAGTGATGGAGGCAAGCCAAAGATTCAGGTGGAAT 11688 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| ||| || || || ||| | || ||| || | | ||||| | | || Sbjct 11687 ACA--AAGGCGAGACGAAGATGTTTACTCCCGAAGAAGTCAGCGCTATGGTGCTTGTGAA 11630 Query 474691 AATGAAACAAACCGCG--AGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTAC 474747 |||||| | || ||| |||| || |||| ||| | || | ||||| || || || Sbjct 11629 AATGAAGGAGACGGCGGAAGCTTAT---TTGGGCAAAACCGTGAAGGATGCCGTCATCAC 11573 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 |||||| ||||| || ||||||||||| | || ||||| ||||| || || | ||| | Sbjct 11572 TGTTCCGGCATACTTCAATGATTCTCAGAGGCAGGCAACGAAAGACGCCGGTACCATTTC 11513 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 || | ||||| | || ||||| || |||||||| || || ||| | ||||| || || Sbjct 11512 TGGATTGAATGTCCTTCGAATTATCAACGAACCAACTGCTGCTGCAATCGCTTACGGCCT 11453 Query 474868 TGATAAGAA 474876 ||| ||||| Sbjct 11452 TGACAAGAA 11444 >seq223 Length=82600 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| | ||||||||||||||| ||||| |||||||| || ||||| || | Sbjct 42068 CCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCT 42127 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || || ||||||||| || | | ||| || || || ||||| ||||| | | Sbjct 42128 TTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAA 42187 Query 480753 GTCTTAACGAAAATTTG 480769 || || || |||||||| Sbjct 42188 GTTTTCACAAAAATTTG 42204 Score = 89.7 bits (98), Expect = 3e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||| || || || ||||||||||| ||||| ||||| |||||||| || ||| || Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTAT-TTTAGT 42692 Query 480693 -TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||||||||||| | || ||| || ||||| || || || || || Sbjct 42693 CTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAG 42752 Query 480752 AGTCTTAACGAAAATTTG 480769 ||| || ||||| || || Sbjct 42753 AGTTTTCACGAATATCTG 42770 >seq69 Length=173048 Score = 89.7 bits (98), Expect = 3e-12 Identities = 184/274 (67%), Gaps = 10/274 (4%) Strand=Plus/Plus Query 297322 GTTTTAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATTCATTATCCTTT- 297380 ||||| ||||||||||| ||||| ||||| ||||| |||| ||| ||||||||| || Sbjct 62365 GTTTTCGATTGTTGGTTCGAATCCGGTTCAATGCCGTATGCCCAACGTCATTATCCGTTC 62424 Query 297381 -TGAAAATTCCGAAATTTTAGACACTTCACAAGATTATATTGCAGATTTTATAACAGAAT 297439 ||| | | | ||||| || || ||| | || || || ||| | ||| Sbjct 62425 GAGAACAGACGGGAATTTGAG--------GAAAATTTTCCGGCCGACTTCATAGCCGAAG 62476 Query 297440 CAATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTACAGCTATATTTA 297499 |||||| ||||| | || ||||| || || || || ||||| || || || | ||| Sbjct 62477 GAATTGACCAAACTCGCGGATGGTTCTACACATTGTTGGTTCTGTCGACCGCCTTGTTTG 62536 Query 297500 ACAAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTTAACGCAGCTGATGGACAAA 297559 |||||| | ||| ||| | ||||| | || | ||| ||||| ||||| | Sbjct 62537 GCAAACCGCCGTTTCGTAATTTGATTGTCAACGGGCTCGTTCTGGCAGCCGATGGTTCCA 62596 Query 297560 AAATGTCAAAAAGTAAAGGTAATTATCCTGATCC 297593 | ||| ||| | ||| |||||||| ||||| Sbjct 62597 AGATGAGCAAACGAAAAAAAAATTATCCCGATCC 62630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268000928995088