Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq195 206 2e-47
seq223 89.7 3e-12
seq69 89.7 3e-12
>seq195
Length=92702
Score = 206 bits (228), Expect = 2e-47
Identities = 378/549 (69%), Gaps = 10/549 (2%)
Strand=Plus/Minus
Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392
|||| |||||||| || ||||| |||||||| || | || | || |||| || || |
Sbjct 11987 TTGGAATTGATTTGGGTACTACGTACAGTTGCGTTGGCGTATTTCAGCATGGAAAGGTGG 11928
Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452
| ||||| ||||| ||||| || || |||| || || |||||| ||||||| || |
Sbjct 11927 AGATAATAGCCAACGACCAGGGCAACCGAACTACGCCGAGCTATGTTGCTTTTACGGACA 11868
Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512
| || || || || ||||| || || |||| | || | ||||| || ||
Sbjct 11867 CGGAGAGGCTGATCGGCGATGCCGCCAAGAATCAGGTGGCTTTAAATCCCCACAACACCG 11808
Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572
|||| || || || || |||| || || | ||||| || |||| || ||||| |
Sbjct 11807 TTTTCGACGCGAAGCGACTGATCGGGCGACGATACGATGACTCCGCTGTGCAGTCTGACA 11748
Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAAGCAAT 474630
|| ||||||||||| |||||||||| || ||| || || ||| | || || | |||
Sbjct 11747 TGAAGCATTGGCCTTTCAAGGTGATAAGTGATGGAGGCAAGCCAAAGATTCAGGTGGAAT 11688
Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690
||| ||| || || || ||| | || ||| || | | ||||| | | ||
Sbjct 11687 ACA--AAGGCGAGACGAAGATGTTTACTCCCGAAGAAGTCAGCGCTATGGTGCTTGTGAA 11630
Query 474691 AATGAAACAAACCGCG--AGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTAC 474747
|||||| | || ||| |||| || |||| ||| | || | ||||| || || ||
Sbjct 11629 AATGAAGGAGACGGCGGAAGCTTAT---TTGGGCAAAACCGTGAAGGATGCCGTCATCAC 11573
Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807
|||||| ||||| || ||||||||||| | || ||||| ||||| || || | ||| |
Sbjct 11572 TGTTCCGGCATACTTCAATGATTCTCAGAGGCAGGCAACGAAAGACGCCGGTACCATTTC 11513
Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867
|| | ||||| | || ||||| || |||||||| || || ||| | ||||| || ||
Sbjct 11512 TGGATTGAATGTCCTTCGAATTATCAACGAACCAACTGCTGCTGCAATCGCTTACGGCCT 11453
Query 474868 TGATAAGAA 474876
||| |||||
Sbjct 11452 TGACAAGAA 11444
>seq223
Length=82600
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| | ||||||||||||||| ||||| |||||||| || ||||| || |
Sbjct 42068 CCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCT 42127
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| || ||||||||| || | | ||| || || || ||||| ||||| | |
Sbjct 42128 TTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAA 42187
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || ||||||||
Sbjct 42188 GTTTTCACAAAAATTTG 42204
Score = 89.7 bits (98), Expect = 3e-12
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||| || || || ||||||||||| ||||| ||||| |||||||| || ||| ||
Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTAT-TTTAGT 42692
Query 480693 -TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||||||||||| | || ||| || ||||| || || || || ||
Sbjct 42693 CTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAG 42752
Query 480752 AGTCTTAACGAAAATTTG 480769
||| || ||||| || ||
Sbjct 42753 AGTTTTCACGAATATCTG 42770
>seq69
Length=173048
Score = 89.7 bits (98), Expect = 3e-12
Identities = 184/274 (67%), Gaps = 10/274 (4%)
Strand=Plus/Plus
Query 297322 GTTTTAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATTCATTATCCTTT- 297380
||||| ||||||||||| ||||| ||||| ||||| |||| ||| ||||||||| ||
Sbjct 62365 GTTTTCGATTGTTGGTTCGAATCCGGTTCAATGCCGTATGCCCAACGTCATTATCCGTTC 62424
Query 297381 -TGAAAATTCCGAAATTTTAGACACTTCACAAGATTATATTGCAGATTTTATAACAGAAT 297439
||| | | | ||||| || || ||| | || || || ||| | |||
Sbjct 62425 GAGAACAGACGGGAATTTGAG--------GAAAATTTTCCGGCCGACTTCATAGCCGAAG 62476
Query 297440 CAATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTACAGCTATATTTA 297499
|||||| ||||| | || ||||| || || || || ||||| || || || | |||
Sbjct 62477 GAATTGACCAAACTCGCGGATGGTTCTACACATTGTTGGTTCTGTCGACCGCCTTGTTTG 62536
Query 297500 ACAAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTTAACGCAGCTGATGGACAAA 297559
|||||| | ||| ||| | ||||| | || | ||| ||||| ||||| |
Sbjct 62537 GCAAACCGCCGTTTCGTAATTTGATTGTCAACGGGCTCGTTCTGGCAGCCGATGGTTCCA 62596
Query 297560 AAATGTCAAAAAGTAAAGGTAATTATCCTGATCC 297593
| ||| ||| | ||| |||||||| |||||
Sbjct 62597 AGATGAGCAAACGAAAAAAAAATTATCCCGATCC 62630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268000928995088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |