Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_020197.1
Length=45606
Score E
Sequences producing significant alignments: (Bits) Value
seq729 116 1e-21
>seq729
Length=25020
Score = 116 bits (128), Expect = 1e-21
Identities = 216/317 (68%), Gaps = 0/317 (0%)
Strand=Plus/Minus
Query 8262 TGATCAATAACGTAGTATTAGTTGGACGTCTAACTAAAGACCCAGAATTAAAACATACCG 8321
|||| ||||| || ||| ||||||| ||| |||| || || || || ||| | ||||
Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCG 1265
Query 8322 GAAACAACATCGCTGTAGCATCTTTCAGTCTTTCGGTTAACCGTCATTTCAAAAATGATA 8381
||| | | ||| || | || | | | | || || ||| |||| | ||| | |
Sbjct 1264 CAAATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAA 1205
Query 8382 ACGGAGAGCGTGAAACTGACTTTATCAATTGCGTTATCTGGAGACAGCAAGCTGAAAACT 8441
||| | || || | || ||||||||||| || || ||| | | ||| |||| |
Sbjct 1204 GCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTT 1145
Query 8442 TGGCTAACTGGGCTAAAAAAGGTGCATTGATTGGCATTACTGGACGTATTCAGACTCGTA 8501
| ||||| | || ||||| | | | || | ||||| ||||| || || | |
Sbjct 1144 TAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAA 1085
Query 8502 GCTATGAAAATCAGCAAGGTCAACGTGTTTACGTGACTGAAGTTGTCGCTGAAAACTTCC 8561
||||||||||||||||| |||||||| || ||||| |||||||| ||||| || ||||
Sbjct 1084 ATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCC 1025
Query 8562 AGATGTTGGAAAGTCGT 8578
| | |||||| ||||
Sbjct 1024 AATTATTGGAATCTCGT 1008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145810403536896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |