Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_020197.1 Length=45606 Score E Sequences producing significant alignments: (Bits) Value seq729 116 1e-21 >seq729 Length=25020 Score = 116 bits (128), Expect = 1e-21 Identities = 216/317 (68%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 8262 TGATCAATAACGTAGTATTAGTTGGACGTCTAACTAAAGACCCAGAATTAAAACATACCG 8321 |||| ||||| || ||| ||||||| ||| |||| || || || || ||| | |||| Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCG 1265 Query 8322 GAAACAACATCGCTGTAGCATCTTTCAGTCTTTCGGTTAACCGTCATTTCAAAAATGATA 8381 ||| | | ||| || | || | | | | || || ||| |||| | ||| | | Sbjct 1264 CAAATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAA 1205 Query 8382 ACGGAGAGCGTGAAACTGACTTTATCAATTGCGTTATCTGGAGACAGCAAGCTGAAAACT 8441 ||| | || || | || ||||||||||| || || ||| | | ||| |||| | Sbjct 1204 GCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTT 1145 Query 8442 TGGCTAACTGGGCTAAAAAAGGTGCATTGATTGGCATTACTGGACGTATTCAGACTCGTA 8501 | ||||| | || ||||| | | | || | ||||| ||||| || || | | Sbjct 1144 TAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAA 1085 Query 8502 GCTATGAAAATCAGCAAGGTCAACGTGTTTACGTGACTGAAGTTGTCGCTGAAAACTTCC 8561 ||||||||||||||||| |||||||| || ||||| |||||||| ||||| || |||| Sbjct 1084 ATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCC 1025 Query 8562 AGATGTTGGAAAGTCGT 8578 | | |||||| |||| Sbjct 1024 AATTATTGGAATCTCGT 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145810403536896