Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1599 82.4 8e-11 >seq1599 Length=6876 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 157682 CATTTTTACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCA 157741 ||| ||| |||| ||||| ||||||||||| || ||| ||||||| ||| ||||||| Sbjct 1280 CATATTT-CGGGAAGTAGCTCAGCTTGGTAGAGCACTTGGTTTGGGACCAAGGGGTCGCA 1338 Query 157742 GGTTCGAATCCTGTCACCCCGA 157763 ||||||||||||||| ||||| Sbjct 1339 GGTTCGAATCCTGTCTTCCCGA 1360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547718744532960