Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq195 484 9e-132 seq223 152 7e-32 seq265 95.1 2e-14 >seq195 Length=92702 Score = 484 bits (536), Expect = 9e-132 Identities = 920/1338 (69%), Gaps = 21/1338 (2%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||| |||| || ||||| || ||||| ||| || ||||| |||| || ||| Sbjct 11991 GCTGTTGGAATTGATTTGGGTACTACGTACAGTTGCGTTGGCGTATTTCAGCATGGAAAG 11932 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| || | || ||||| || ||||| || || || || ||||| ||||| Sbjct 11931 GTGGAGATAATAGCCAACGACCAGGGCAACCGAACTACGCCGAGCTATGTTGCTTTTACG 11872 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || | || | || |||||||| || |||||| ||| | || || ||| Sbjct 11871 GACACGGAGAGGCTGATCGGCGATGCCGCCAAGAATCAGGTGGCTTTAAATCCCCACAAC 11812 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCG--GATAAGAAAGTCCAAG 195536 || || || ||||||||||| || || || || | | || || || || Sbjct 11811 ACCGTTTTCGACGCGAAGCGACTGATCGGGCG--ACGATACGATGACTCCGCTGTGCAGT 11754 Query 195537 ACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTA 195596 || || ||| | ||| ||| | ||| || | ||| | | ||||| | |||| Sbjct 11753 CTGACATGAAGCATTGGCCTT-TCAAGGTGATAA--GTGATGGAGGCAAGCCAAAGATTC 11697 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 | || |||| | || |||| ||| ||| ||||||||||| | |||||||| Sbjct 11696 AGGTGGAATACAAAGGCGAGACGAAGATGTTTACTCCCGAAGAAGTCAGCGCTATGGTGC 11637 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | || ||||||||||| |||||| ||| |||| ||||| ||||| ||||| || Sbjct 11636 TTGTGAAAATGAAGGAGACGGCGGAAGCTTATTTGGGCAAAACCGTGAAGGATGCCGTCA 11577 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | ||||| || || ||||||| |||||| || | ||||| || || ||||| | | | | Sbjct 11576 TCACTGTTCCGGCATACTTCAATGATTCTCAGAGGCAGGCAACGAAAGACGCCGGTACCA 11517 Query 195777 TTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 || | || | || ||| ||| |||||||||| |||||||| || |||||||| ||||| Sbjct 11516 TTTCTGGATTGAA-TGTCCTTCGAATTATCAACGAACCAACTGCTGCTGCAATCGCTTAC 11458 Query 195836 GGTCTGGACAAGAACAAGGAC-GAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 || || |||||||| | | || | ||| |||||| | || || ||||| || || || Sbjct 11457 GGCCTTGACAAGAA-AGGTACTGGAGAACGAAATGTGCTCATTTTCGATCTGGGCGGCGG 11399 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||| || ||||| || || | | ||||| | ||||||||| ||||||||| |||| || Sbjct 11398 TACCTTCGATGTGTCCATTTTGACAATTGAGGATGGTATATTTGAAGTAAAGTCTACGGC 11339 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGA 196014 || ||||||||||| || |||||||| ||||| || | | ||||| | Sbjct 11338 AGGCGATACTCATCTTGGCGGTGAAGACTTCGACAATCGCATGGTGACCCATTTCGTGGC 11279 Query 196015 TGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCT 196074 ||||||| || || || |||||||| || || ||||||||| | || | ||||| | Sbjct 11278 TGAGTTCAAGCGCAAAAACAAGAAAGACATGTCGGGAAATCCTCGTGCCTTACGTCGTTT 11219 Query 196075 TAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGA 196134 | || || || ||||| ||||| |||| | | || | ||| | | | || Sbjct 11218 ACGTACAGCTTGCGAACGAGCCAAGAGAACGTTAAGTAGCTCGACCCAAGCGAGCATAGA 11159 Query 196135 GATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGA 196194 |||||| |||| || || || |||| || || || || || ||||| ||||| || Sbjct 11158 AATTGATAGCTTGTACGAGGGCATCGACTATTACACGACGATCACTCGTGCCCGTTTCGA 11099 Query 196195 AGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGT-ACTTCGTG 196253 |||| | | | |||||||| | | | |||| || |||||| |||| ||||| | Sbjct 11098 AGAGCTTTGCGCCGATTTGTTCCGCTCGACTTTGGATCCAGTTGAA-AAGTCTCTTCGCG 11040 Query 196254 ACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTA 196313 | || ||| |||| |||||| |||| | || |||| | || || || || ||||||| Sbjct 11039 ATGCCAAGTTGGACAAGTCTCAGGTGCACGATGTTGTGTTGGTTGGTGGTTCGACCCGTA 10980 Query 196314 TTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAATAAAGATTTAAACAAAACG 196372 ||||||| ||||| || ||| | | || |||||||||| || || | ||||| | Sbjct 10979 TTCCGAAAGTTCAAAAGTTGC-TGCAAGACTTCTTCAATGGAAAGGAGCTGAACAAGAGC 10921 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||| ||||| || || || ||||| || || || || ||||| |||||||| ||||| Sbjct 10920 ATCAATCCGGACGAGGCCGTAGCTTACGGGGCTGCGGTACAGGCGGCTATTCTGTCAGG- 10862 Query 196433 GTTGACAATAATAA---CGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTG 196489 ||||| | | || ||||||||| |||| | || ||| | ||| |||| || Sbjct 10861 --CGACAAGCACGAGGCGGTGCAAGATCTTTTGCTTTTGGACGTTACGCCCTTATCTTTG 10804 Query 196490 GGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCG 196549 ||| | ||||| || |||||||||||||| | || | | ||||| || ||||| Sbjct 10803 GGTATCGAAACCGCCGGTGGTGTTATGACCGCTTTGATAAAGCGAAACACTACGATTCCA 10744 Query 196550 ACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAA 196609 || ||| | ||||| || | || |||||||| ||||| || || || | || || Sbjct 10743 ACGAAGGTGTCCCAAGTGTTCACTACTTATTCCGACAATCAGCCCGGAGTGCTGATCCAG 10684 Query 196610 GTATATGAAGGAGAACGC 196627 || || ||||| |||||| Sbjct 10683 GTGTACGAAGGCGAACGC 10666 >seq223 Length=82600 Score = 152 bits (168), Expect = 7e-32 Identities = 120/144 (83%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || ||||| |||||||||||||| ||||||||||| || ||| ||||| Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | ||| | || || ||||| || |||||||||||||| |||||| Sbjct 42431 GACACCATTGAAAACGTTAAAACAAAAATACAAGACAAAGAAGGCATTCCACCTGATCAG 42372 Query 171982 CAACGACTTATTTTTGCTGGTAAA 172005 || ||| | |||||||||||| || Sbjct 42371 CAGCGATTAATTTTTGCTGGTGAA 42348 Score = 140 bits (154), Expect = 4e-28 Identities = 121/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||||||||||||||| || ||||| ||||| |||||||| || || ||| Sbjct 41930 GTGGTATGCAAATCTTTGTGAAAACTCTAACTGGCAAAACAATCACCCTGGAAGTCGAGC 41871 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| || || ||||| ||| | || | || |||||||||||||| || || ||||||| Sbjct 41870 CGTCGGATACGATCGAGAACGTAAAGACGAAAATTCAAGATAAGGAGGGGATACCACCCG 41811 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAAC 172006 | || || || || ||||| || ||||||| Sbjct 41810 ACCAACAGCGCCTGATTTTCGCCGGTAAAC 41781 Score = 140 bits (154), Expect = 4e-28 Identities = 116/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||||||||| | || |||||||| || || || || || ||| |||| Sbjct 42207 ATGCAAATTTTTGTGAAAACTTTAACCGGAAAAACAATAACGCTGGAAGTGGAGCCGTCG 42148 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | |||||||| ||||| ||||||||||| |||||||| ||||| Sbjct 42147 GACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGTATTCCACCTGATCAA 42088 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | ||||||||||||| Sbjct 42087 CAACGTTTAATTTTTGCTGGTA 42066 Score = 127 bits (140), Expect = 3e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || || || |||||||| || || || |||||| |||| Sbjct 43339 ATGCAGATATTTGTGAAAACGCTAACCGGCAAAACTATTACGCTGGAAGTTGAGCCGTCC 43280 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || |||||| | || | || ||||||||||||||||| || || || |||||| Sbjct 43279 GATACCATTGATAACGTGAAGACGAAAATTCAAGATAAGGAAGGAATCCCTCCAGATCAG 43220 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || ||||| || ||||| ||||| Sbjct 43219 CAGCGACTAATCTTTGCCGGTAA 43197 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || | || || || |||||||| || || || ||| ||||| Sbjct 43058 ATGCAAATTTTCGTCAAGACATTGACGGGCAAGACTATCACTCTTGAAGTAGAGCCGTCA 42999 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || | ||||||||||| || ||||| |||||||| || ||| Sbjct 42998 GACACCATTGAGAATGTTAAGACTAAGATTCAAGACAAAGAAGGTATTCCACCTGACCAG 42939 Query 171982 CAACGACTTATTTTTGCTGGTAAA 172005 || || ||||| || || |||||| Sbjct 42938 CAGCGTCTTATCTTCGCAGGTAAA 42915 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || |||||||| || || |||||||| || || || || |||||| |||| Sbjct 43916 ATGCAGATTTTCGTGAAAACGCTCACGGGAAAAACCATTACGCTTGAAGTTGAGCCGTCT 43857 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| |||| || || | || || ||||||||||||||||||||||| || ||||| Sbjct 43856 GACTCAATTGAAAATGTGAAGAATAAAATTCAAGATAAGGAAGGCATTCCTCCGGATCAA 43797 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || || || || || || ||| Sbjct 43796 CAGCGTCTAATCTTCGCAGGT 43776 >seq265 Length=70602 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 || ||||| || ||| ||||||| |||| || ||||| || || || || | | | Sbjct 25694 CCAGAAGAGATATCGGCTATGGTATTGACGAAAATGAAAGAAACGGCAGAGGCGTATCTT 25753 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || |||| || | | | || || || || || || || || |||| |||| | || ||| Sbjct 25754 GGCAAAAAGGTCACACACGCTGTGGTTACGGTGCCCGCCTATTTCAATGATGCCCAGCGA 25813 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 ||||| ||||||||||| | | | || || ||||||| | |||| | || ||||| ||| Sbjct 25814 CAGGCAACAAAGGACGCAGGTACAATCGCTGGTCTAACCGTTCTTCGGATCATCAACGAA 25873 Query 195812 CC 195813 || Sbjct 25874 CC 25875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657828224048320