Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq223 136 7e-27
>seq223
Length=82600
Score = 136 bits (150), Expect = 7e-27
Identities = 116/143 (81%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|| |||||||| |||| || ||| ||||| ||||| |||||||| |||||||| |||||
Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
|| || | || ||| |||||||| | ||||||||| || || |||||||| || |||
Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316
Query 193338 AGCGTTTTTACAAATATTTGCAT 193360
|||||||| |||||||| |||||
Sbjct 43317 AGCGTTTTCACAAATATCTGCAT 43339
Score = 129 bits (142), Expect = 1e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
||||||||||| | | ||| ||||||||||| ||||||||||| || ||||| ||||
Sbjct 41216 CCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGGCC 41275
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | || ||||| || |||| ||| ||||| |||||||||||||| ||||| |
Sbjct 41276 TTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCAAT 41335
Query 193341 GTTTTTACAAATATTTGCATT 193361
||||| |||||||||||||||
Sbjct 41336 GTTTTGACAAATATTTGCATT 41356
Score = 127 bits (140), Expect = 4e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| ||||||||||||| ||| |||||||| || || |||||||| ||||||||||| |||
Sbjct 42352 CCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGTT 42411
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | ||| ||| || || || | ||| ||||| || || || ||||| || || |||
Sbjct 42412 TTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAGC 42471
Query 193341 GTTTTTACAAATATTTGCAT 193360
||||| || |||||||||||
Sbjct 42472 GTTTTAACGAATATTTGCAT 42491
Score = 127 bits (140), Expect = 4e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| ||||| |||| || |||||||||||| || || |||||||| ||||||||||| ||
Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| |||| ||||||||| |||| || ||||| || || || || || || |||||
Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753
Query 193341 GTTTTTACAAATATTTGCAT 193360
||||| || ||||| |||||
Sbjct 42754 GTTTTCACGAATATCTGCAT 42773
Score = 120 bits (132), Expect = 5e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| ||||||||||| | ||||||||||| || || ||||| ||||| || ||||||| |
Sbjct 42068 CCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCT 42127
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | ||| |||||| || || | ||| ||||| || ||||| ||||| || ||||
Sbjct 42128 TTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAA 42187
Query 193341 GTTTTTACAAATATTTGCATT 193361
||||| ||||| |||||||||
Sbjct 42188 GTTTTCACAAAAATTTGCATT 42208
Score = 114 bits (126), Expect = 2e-20
Identities = 113/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 193216 GTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTT 193275
|||| || ||||||||||||| ||| ||||| || || || || ||||| ||||| || |
Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552
Query 193276 TGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTG 193335
| | || | |||| || ||||| |||| ||| ||||| | ||| ||||| || ||||
Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612
Query 193336 TTAGCGTTTTTACAAATATTTGCATT 193361
| |||||||| || ||||| ||||||
Sbjct 41613 TCAGCGTTTTCACGAATATCTGCATT 41638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899607662953920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |