Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq223 96.9 5e-15 seq18 87.8 3e-12 >seq223 Length=82600 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| ||||||| | ||||||||||| || || | ||||| || || Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| |||| ||||||||||| ||||||||||| || || || || Sbjct 42431 GACACCATTGAAAACGTTAAAACAAAAATACAAGACAAAGAAGGCATTCCACCTGATCAG 42372 Query 155943 CAAAGATTGATTTATGCCGGT 155963 || |||| |||| ||| ||| Sbjct 42371 CAGCGATTAATTTTTGCTGGT 42351 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||||||||| || |||||||| || | ||||| || ||| Sbjct 41355 ATGCAAATATTTGTCAAAACATTGACAGGCAAAACTATAACTCTCGAAGTGGAGCCTTCG 41296 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| || ||||| || |||||||| || ||||| || || Sbjct 41295 GACACTATCGATAACGTGAAGGCCAAGATACAGGACAAAGAAGGAATTCCTCCTGATCAG 41236 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || | |||||| |||||||| Sbjct 41235 CAGCGTCTGATTTTTGCCGGTA 41214 Score = 93.3 bits (102), Expect = 6e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| | || || ||||||||||| | ||||| || || Sbjct 43339 ATGCAGATATTTGTGAAAACGCTAACCGGCAAAACTATTACGCTGGAAGTTGAGCCGTCC 43280 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||||| | ||||| |||||||| ||||| || |||||||| || Sbjct 43279 GATACCATTGATAACGTGAAGACGAAAATTCAAGATAAGGAAGGAATCCCTCCAGATCAG 43220 Query 155943 CAAAGATTGATTTATGCCGGTAAG 155966 || || | || | |||||||||| Sbjct 43219 CAGCGACTAATCTTTGCCGGTAAG 43196 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | ||||| | ||||| || || ||||| | ||||| ||| ||| Sbjct 42773 ATGCAGATATTCGTGAAAACTCTAACTGGCAAGACAATTACGCTGGAAGTGGAACCTTCG 42714 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || | |||||||||||| |||||||| || || || || ||| Sbjct 42713 GATACTATTGAAAATGTAAAGACTAAAATACAAGACAAAGAAGGTATTCCGCCTGATCAA 42654 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || || | || | ||| ||| ||| Sbjct 42653 CAGCGACTAATCTTTGCTGGTGAGC 42629 >seq18 Length=263653 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 18182 TCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttttt 18241 ||||||| ||| || | || || ||||| || | ||| ||||| | ||| | ||| ||| Sbjct 150336 TCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGTTTCTTT 150277 Query 18242 AGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCT 18301 ||||| || ||||| || || || | |||||||||||||||||| ||| || || ||| Sbjct 150276 AGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCAAATGCT 150217 Query 18302 A 18302 | Sbjct 150216 A 150216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731833979249600