Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq223 136 8e-27
>seq223
Length=82600
Score = 136 bits (150), Expect = 8e-27
Identities = 120/150 (80%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446
|||| | | |||||||||||||| || |||||||||||| || || |||||||| |||||
Sbjct 42624 CAATAGCTCACCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTG 42683
Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506
||||||| | |||||||| |||| ||| || | ||| ||||| || ||||| || ||
Sbjct 42684 TATTTTAGTCTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTT 42743
Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||||| ||||| | |||||||||||
Sbjct 42744 GCCAGTTAGAGTTTTCACGAATATCTGCAT 42773
Score = 116 bits (128), Expect = 7e-21
Identities = 116/149 (78%), Gaps = 1/149 (1%)
Strand=Plus/Plus
Query 192389 ATTGTTT-ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
|||| || ||||||||| ||||||| ||| ||||||||||| || |||||||| ||||||
Sbjct 42343 ATTGATTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGT 42402
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507
||||| |||| || || || | ||||||| || ||||| || || || |||||
Sbjct 42403 ATTTTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTT 42462
Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | ||||||| ||||| |||||
Sbjct 42463 CCAGTAAGCGTTTTAACGAATATTTGCAT 42491
Score = 114 bits (126), Expect = 3e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||| |||||||||| || ||| ||||| || || |||||||| |||||||| |||||
Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
| || || ||| || | ||| |||| || ||||| || ||||| ||||| || |||
Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316
Query 192514 AATGTTTTAATAAATATCTGCAT 192536
| ||||| | ||||||||||||
Sbjct 43317 AGCGTTTTCACAAATATCTGCAT 43339
Score = 104 bits (114), Expect = 5e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455
||| || ||||||| | ||||||||| || || || ||||| |||||||| ||||||||
Sbjct 43776 ACCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATT 43835
Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515
|| ||||| || || || |||| || ||||| || ||||||||||| || || |
Sbjct 43836 CTTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAG 43895
Query 192516 TGTTTTAATAAATATCTGCATT 192537
||||| | || |||||||||
Sbjct 43896 CGTTTTCACGAAAATCTGCATT 43917
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| ||||| | |||||||||||||| || ||||| ||||| || |||||
Sbjct 42066 TACCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGG 42125
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||| || || |||| || |||| || ||||| || || || ||||| || ||||
Sbjct 42126 CTTTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTA 42185
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
| ||||| | ||| || ||||||
Sbjct 42186 AAGTTTTCACAAAAATTTGCATT 42208
Score = 93.3 bits (102), Expect = 8e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451
||||||| ||||| ||||||| ||| ||||| ||||| || || ||||| ||||| || |
Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552
Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511
| || ||||| ||| | ||| || | || ||||| | |||||| || || || |
Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612
Query 192512 TTAATGTTTTAATAAATATCTGCATT 192537
| | ||||| | ||||||||||||
Sbjct 41613 TCAGCGTTTTCACGAATATCTGCATT 41638
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||| ||||| || | | ||| |||||||| || ||||||||||| || ||||| ||
Sbjct 41214 TACCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGG 41273
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|| || ||| |||| || || | || ||||| ||||| || ||||| || || |
Sbjct 41274 CCTTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCA 41333
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
||||||| | |||||| ||||||
Sbjct 41334 ATGTTTTGACAAATATTTGCATT 41356
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984427577670600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |