Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq223 136 8e-27 >seq223 Length=82600 Score = 136 bits (150), Expect = 8e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 |||| | | |||||||||||||| || |||||||||||| || || |||||||| ||||| Sbjct 42624 CAATAGCTCACCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTG 42683 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 ||||||| | |||||||| |||| ||| || | ||| ||||| || ||||| || || Sbjct 42684 TATTTTAGTCTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTT 42743 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||| | ||||||||||| Sbjct 42744 GCCAGTTAGAGTTTTCACGAATATCTGCAT 42773 Score = 116 bits (128), Expect = 7e-21 Identities = 116/149 (78%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 192389 ATTGTTT-ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 |||| || ||||||||| ||||||| ||| ||||||||||| || |||||||| |||||| Sbjct 42343 ATTGATTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGT 42402 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| |||| || || || | ||||||| || ||||| || || || ||||| Sbjct 42403 ATTTTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTT 42462 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||| ||||| ||||| Sbjct 42463 CCAGTAAGCGTTTTAACGAATATTTGCAT 42491 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| |||||||||| || ||| ||||| || || |||||||| |||||||| ||||| Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 | || || ||| || | ||| |||| || ||||| || ||||| ||||| || ||| Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | ||||| | |||||||||||| Sbjct 43317 AGCGTTTTCACAAATATCTGCAT 43339 Score = 104 bits (114), Expect = 5e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| || ||||||| | ||||||||| || || || ||||| |||||||| |||||||| Sbjct 43776 ACCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATT 43835 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 || ||||| || || || |||| || ||||| || ||||||||||| || || | Sbjct 43836 CTTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAG 43895 Query 192516 TGTTTTAATAAATATCTGCATT 192537 ||||| | || ||||||||| Sbjct 43896 CGTTTTCACGAAAATCTGCATT 43917 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| ||||| | |||||||||||||| || ||||| ||||| || ||||| Sbjct 42066 TACCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGG 42125 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||| || || |||| || |||| || ||||| || || || ||||| || |||| Sbjct 42126 CTTTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTA 42185 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 | ||||| | ||| || |||||| Sbjct 42186 AAGTTTTCACAAAAATTTGCATT 42208 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 ||||||| ||||| ||||||| ||| ||||| ||||| || || ||||| ||||| || | Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | || ||||| ||| | ||| || | || ||||| | |||||| || || || | Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612 Query 192512 TTAATGTTTTAATAAATATCTGCATT 192537 | | ||||| | |||||||||||| Sbjct 41613 TCAGCGTTTTCACGAATATCTGCATT 41638 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| ||||| || | | ||| |||||||| || ||||||||||| || ||||| || Sbjct 41214 TACCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGG 41273 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 || || ||| |||| || || | || ||||| ||||| || ||||| || || | Sbjct 41274 CCTTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCA 41333 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 ||||||| | |||||| |||||| Sbjct 41334 ATGTTTTGACAAATATTTGCATT 41356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984427577670600