Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq223 136 7e-27 >seq223 Length=82600 Score = 136 bits (150), Expect = 7e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 |||| | | ||||||||| |||| || |||||| ||||| || || |||||||| ||||| Sbjct 42624 CAATAGCTCACCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTG 42683 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 ||||||| | |||||||| |||||||| || | ||| ||||| || ||||| || || Sbjct 42684 TATTTTAGTCTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTT 42743 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||| | |||||||||||| Sbjct 42744 GCCAGTTAGAGTTTTCACGAATATCTGCAT 42773 Score = 125 bits (138), Expect = 1e-23 Identities = 118/149 (79%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 171922 ATTGTTT-ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 |||| || ||||||||||||||||| ||| || |||||||| || |||||||| |||||| Sbjct 42343 ATTGATTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGT 42402 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| |||| || || || || ||||||| || ||||| || || || ||||| Sbjct 42403 ATTTTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTT 42462 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||||| |||||| ||||| Sbjct 42463 CCAGTAAGCGTTTTAACGAATATTTGCAT 42491 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| ||||| |||| || ||| || || || || |||||||| |||||||| ||||| Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 | || || ||| || ||||| |||| || ||||| || ||||| ||||| || ||| Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 | ||||| | ||||||||||| Sbjct 43317 AGCGTTTTCACAAATATCTGCAT 43339 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171925 GTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTT 171984 ||||||| ||||||||||||| ||| || || ||||| || || ||||| ||||| || | Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552 Query 171985 TATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 172044 | || ||||| ||| ||||| || | || ||||| | |||||| || || || | Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612 Query 172045 TTAATGTTTTAATGAATATCTGCATT 172070 | | ||||| | ||||||||||||| Sbjct 41613 TCAGCGTTTTCACGAATATCTGCATT 41638 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||||||||||||||| | ||||| |||||||| || ||||| ||||| || ||||| Sbjct 42066 TACCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGG 42125 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| || || ||||| || |||| || ||||| || || || ||||| || |||| Sbjct 42126 CTTTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTA 42185 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 | ||||| | || || |||||| Sbjct 42186 AAGTTTTCACAAAAATTTGCATT 42208 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 |||||| || || || | | ||| ||||||||||| || |||||||| ||||| || || Sbjct 42915 TTTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTT 42974 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 | | || ||||| || || ||||||| |||||||| ||||| || || || || || Sbjct 42975 AGTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGT 43034 Query 172046 TAATGTTTTAATGAATATCTGCATT 172070 ||||| || | ||| || |||||| Sbjct 43035 CAATGTCTTGACGAAAATTTGCATT 43059 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| || || |||| | |||||| || || || || ||||| |||||||| |||||||| Sbjct 43776 ACCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATT 43835 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 || ||||| || | || |||| || ||||| || ||||||||||| || || | Sbjct 43836 CTTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAG 43895 Query 172049 TGTTTTAATGAATATCTGCATT 172070 ||||| | ||| ||||||||| Sbjct 43896 CGTTTTCACGAAAATCTGCATT 43917 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| | | ||| || ||||| || ||||||||||| || ||||| || Sbjct 41214 TACCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGG 41273 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 || || ||| ||||| || || | || ||||| ||||| || ||||| || || | Sbjct 41274 CCTTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCA 41333 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 ||||||| | ||||| |||||| Sbjct 41334 ATGTTTTGACAAATATTTGCATT 41356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905088978184800