Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq223 136 7e-27
>seq223
Length=82600
Score = 136 bits (150), Expect = 7e-27
Identities = 120/150 (80%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
|||| | | ||||||||| |||| || |||||| ||||| || || |||||||| |||||
Sbjct 42624 CAATAGCTCACCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTG 42683
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
||||||| | |||||||| |||||||| || | ||| ||||| || ||||| || ||
Sbjct 42684 TATTTTAGTCTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTT 42743
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||||| ||||| | ||||||||||||
Sbjct 42744 GCCAGTTAGAGTTTTCACGAATATCTGCAT 42773
Score = 125 bits (138), Expect = 1e-23
Identities = 118/149 (79%), Gaps = 1/149 (1%)
Strand=Plus/Plus
Query 171922 ATTGTTT-ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|||| || ||||||||||||||||| ||| || |||||||| || |||||||| ||||||
Sbjct 42343 ATTGATTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGT 42402
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| |||| || || || || ||||||| || ||||| || || || |||||
Sbjct 42403 ATTTTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTT 42462
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | ||||||| |||||| |||||
Sbjct 42463 CCAGTAAGCGTTTTAACGAATATTTGCAT 42491
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||| ||||| |||| || ||| || || || || |||||||| |||||||| |||||
Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
| || || ||| || ||||| |||| || ||||| || ||||| ||||| || |||
Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
| ||||| | |||||||||||
Sbjct 43317 AGCGTTTTCACAAATATCTGCAT 43339
Score = 102 bits (112), Expect = 1e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171925 GTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTT 171984
||||||| ||||||||||||| ||| || || ||||| || || ||||| ||||| || |
Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552
Query 171985 TATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 172044
| || ||||| ||| ||||| || | || ||||| | |||||| || || || |
Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612
Query 172045 TTAATGTTTTAATGAATATCTGCATT 172070
| | ||||| | |||||||||||||
Sbjct 41613 TCAGCGTTTTCACGAATATCTGCATT 41638
Score = 100 bits (110), Expect = 5e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||||||||| | ||||| |||||||| || ||||| ||||| || |||||
Sbjct 42066 TACCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGG 42125
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||| || || ||||| || |||| || ||||| || || || ||||| || ||||
Sbjct 42126 CTTTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTA 42185
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
| ||||| | || || ||||||
Sbjct 42186 AAGTTTTCACAAAAATTTGCATT 42208
Score = 100 bits (110), Expect = 5e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985
|||||| || || || | | ||| ||||||||||| || |||||||| ||||| || ||
Sbjct 42915 TTTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTT 42974
Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045
| | || ||||| || || ||||||| |||||||| ||||| || || || || ||
Sbjct 42975 AGTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGT 43034
Query 172046 TAATGTTTTAATGAATATCTGCATT 172070
||||| || | ||| || ||||||
Sbjct 43035 CAATGTCTTGACGAAAATTTGCATT 43059
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988
||| || || |||| | |||||| || || || || ||||| |||||||| ||||||||
Sbjct 43776 ACCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATT 43835
Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048
|| ||||| || | || |||| || ||||| || ||||||||||| || || |
Sbjct 43836 CTTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAG 43895
Query 172049 TGTTTTAATGAATATCTGCATT 172070
||||| | ||| |||||||||
Sbjct 43896 CGTTTTCACGAAAATCTGCATT 43917
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||| |||||||| | | ||| || ||||| || ||||||||||| || ||||| ||
Sbjct 41214 TACCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGG 41273
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|| || ||| ||||| || || | || ||||| ||||| || ||||| || || |
Sbjct 41274 CCTTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCA 41333
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
||||||| | ||||| ||||||
Sbjct 41334 ATGTTTTGACAAATATTTGCATT 41356
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905088978184800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |