Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_021305.1
Length=76179
Score E
Sequences producing significant alignments: (Bits) Value
seq904 178 6e-40
>seq904
Length=17929
Score = 178 bits (196), Expect = 6e-40
Identities = 405/603 (67%), Gaps = 15/603 (2%)
Strand=Plus/Minus
Query 65787 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 65846
|||| |||||| | || ||||||||||| || |||||||| || || | || |||
Sbjct 5108 CCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACG 5049
Query 65847 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 65906
|| || | | | ||| |||||| | ||| | | || | ||||| |||||
Sbjct 5048 CTGCAGGTGATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAA 4989
Query 65907 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 65966
||| | |||||||| ||||| || || || || |||||||||| || ||
Sbjct 4988 CACGCGCTGGACCCAATCTACGCACGTAAACTGGGCGTCGATATCGACAACCTGCTG-TG 4930
Query 65967 GTTC-AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGG 66025
| | |||||||||| ||||||||||| ||||| ||| |||| ||| | |||||
Sbjct 4929 CTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGGCGCGTTCTGG 4870
Query 66026 CGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGA 66085
|| | | | ||||||||||||| |||||||| ||| |||| || || ||||
Sbjct 4869 CGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGA 4810
Query 66086 AGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCG 66145
|||||| ||||| ||| |||| | ||||| || || | ||| ||||| |||||
Sbjct 4809 AGGCGAAATCGGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCG 4750
Query 66146 CAAGCTCACTGGCACCATCTCCAGCA--CCAACACGCTGACGCTCTGGGTCAACCAGTTG 66203
||||| | || | | || |||| ||||||||||| | ||| |||||||| |
Sbjct 4749 TAAGCTGGCGGGTA--ACCTGAAGCAGTCCAACACGCTGCTGATCTTCATCAACCAGATC 4692
Query 66204 CGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAACGAGACCACCACGGGCGGCAAG 66260
|| ||| || || ||| | ||| |||| || ||||| || || || ||
Sbjct 4691 CGTATGAAAATTGG---TGTGATGTTCGGTAACCCG---GAAACCACTACCGGTGGTAAC 4638
Query 66261 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 66320
|| ||| ||||||||||| || || | || ||||||| |||| | | | ||| ||
Sbjct 4637 GCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAG 4578
Query 66321 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 66380
||||| | | || || | | ||||| ||||| || || |||||||| | || ||
Sbjct 4577 GGCGAAAACGTGGTGGGTAGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCG 4518
Query 66381 CCG 66383
|||
Sbjct 4517 CCG 4515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 243635658924240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |