Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq732 208 9e-49 >seq732 Length=24842 Score = 208 bits (230), Expect = 9e-49 Identities = 492/733 (67%), Gaps = 49/733 (7%) Strand=Plus/Plus Query 152727 AAAGATGTG-TATGATGCGTTCCAGTCCTATGAGTATGAAGTAAACACCCTACATACTGC 152785 ||||| ||| || ||||| |||||||| ||||| |||||||||||||| || || || Sbjct 146 AAAGA-GTGCTACGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGC 204 Query 152786 CAACGGACAAACCCCGTTTGTTACCATCACTTTCGGTACTGGTACGAGCGATTATGAA-- 152843 |||||| || || |||||||| ||| | ||| ||| || || ||| | ||| Sbjct 205 CAACGGTCAGACGCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGC---TGGGAATC 261 Query 152844 -CGCATGATCCAGAAAGCGATCCTGAAAAACCGTATTCGC-GGCCTTGGTAAAGAGGGTA 152901 ||| |||| ||| || | |||||| ||||||| |||| ||||| |||||| | ||| Sbjct 262 GCGCCTGATTCAGGAATCTATCCTGCGTAACCGTA-TCGCAGGCCTCGGTAAAAACCGTA 320 Query 152902 TTACTCCGGTATTCCCGAAACTGGT-TATG---TTCATGGAAAAAGGAATTAACCTTGAT 152957 ||| |||| |||||||||||||| | || ||| | | || | |||| | | Sbjct 321 AAACTGCGGTGTTCCCGAAACTGGTGTTTGCGATTCGCG----ATGGTCTGAACCATAAA 376 Query 152958 CCAGAGGATCAAAACTATGACATCAAACAACTTGCCCTGGAATGTGCTTCGAAACGCATG 153017 || |||| ||||| ||||||||||| || || ||||| || || || |||||| Sbjct 377 AAAGGCGATCCGAACTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATG 436 Query 153018 TACCCAGATATCATTA-----GCGCATCTAATAACCGCCGTATCACTGGTTCTAGCGTTC 153072 || || |||||| | | | || || | | | |||| |||| |||| Sbjct 437 TATCCGGATATCCTGAACTACGATCAGGTAGTGAAAG-----TCACCGGTT----CGTT- 486 Query 153073 CTGTATCTCCTATGGGTTGTCGCAGTTTCCTTAGCGTGTGGCATGATGATAACGGTAATG 153132 | | | || ||||| || ||||| ||||| |||||||| | |||| ||||| | Sbjct 487 -TAAAACCCCGATGGGCTGCCGCAGCTTCCTCGGCGTGTGGGAAAATGAAAACGGCGAGC 545 Query 153133 AAATTCTGGATGGACGTAATAACCTTGGTGTGGTGACAATCAACCTCCCGCGCATTGCGA 153192 | || | ||||| ||||| ||||| || ||| | | | ||||| ||||| ||||| Sbjct 546 AGATCCACGATGGTCGTAACAACCTCGGCGTGATCAGCCTGAACCTGCCGCGTATTGC-- 603 Query 153193 TCGAAGCTGAAGCACAGGAAGATGAAGACGCACACGACGCATTCTGGCGCATCCTTGATG 153252 || |||||| | | |||||| | | | |||||| | || |||| Sbjct 604 TC----TGGAAGCAAAAGGCGATGAA---------GCCACCTTCTGGAAGCTGCTGGATG 650 Query 153253 AACGTCTGGATCTGTGCTTTGAAGCCCTGATGACTCGTATCGAAAGCCTACGCGGTGTTA 153312 ||||||||| ||| | | || |||||||| ||||||| | || || || | Sbjct 651 AACGTCTGGTGCTGGCACGTAAGGCGCTGATGACCCGTATCGCTCGTCTCGAAGGCGTGA 710 Query 153313 AAGCCAGTGTTGCGCCGATCCTGTACACAGAAGGTGCTTTTGGTGTCCGACTGAAACCGG 153372 |||| | || || |||||||| || | |||||||||| ||| || || || || | | Sbjct 711 AAGCGCGCGTGGCCCCGATCCTCTATATGGAAGGTGCTTGTGGCGTGCGTCTCAATGCTG 770 Query 153373 ATGATGAAATTCTGGAACTGTTCAAAAATGGGCGTAGCTCTATCAGCCTTGGTTATATCG 153432 | ||||| || ||| | |||||||| || ||| ||||| || ||||| |||| Sbjct 771 ACGATGATGTTTCTGAAATCTTCAAAAACGGTCGTGCGTCTATTTCGCTGGGTTACATCG 830 Query 153433 GACTACATGAAAC 153445 | | || ||||| Sbjct 831 GCATCCACGAAAC 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563769110673120