Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_021344.2
Length=176227
Score E
Sequences producing significant alignments: (Bits) Value
seq732 208 9e-49
>seq732
Length=24842
Score = 208 bits (230), Expect = 9e-49
Identities = 492/733 (67%), Gaps = 49/733 (7%)
Strand=Plus/Plus
Query 152727 AAAGATGTG-TATGATGCGTTCCAGTCCTATGAGTATGAAGTAAACACCCTACATACTGC 152785
||||| ||| || ||||| |||||||| ||||| |||||||||||||| || || ||
Sbjct 146 AAAGA-GTGCTACGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGC 204
Query 152786 CAACGGACAAACCCCGTTTGTTACCATCACTTTCGGTACTGGTACGAGCGATTATGAA-- 152843
|||||| || || |||||||| ||| | ||| ||| || || ||| | |||
Sbjct 205 CAACGGTCAGACGCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGC---TGGGAATC 261
Query 152844 -CGCATGATCCAGAAAGCGATCCTGAAAAACCGTATTCGC-GGCCTTGGTAAAGAGGGTA 152901
||| |||| ||| || | |||||| ||||||| |||| ||||| |||||| | |||
Sbjct 262 GCGCCTGATTCAGGAATCTATCCTGCGTAACCGTA-TCGCAGGCCTCGGTAAAAACCGTA 320
Query 152902 TTACTCCGGTATTCCCGAAACTGGT-TATG---TTCATGGAAAAAGGAATTAACCTTGAT 152957
||| |||| |||||||||||||| | || ||| | | || | |||| | |
Sbjct 321 AAACTGCGGTGTTCCCGAAACTGGTGTTTGCGATTCGCG----ATGGTCTGAACCATAAA 376
Query 152958 CCAGAGGATCAAAACTATGACATCAAACAACTTGCCCTGGAATGTGCTTCGAAACGCATG 153017
|| |||| ||||| ||||||||||| || || ||||| || || || ||||||
Sbjct 377 AAAGGCGATCCGAACTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATG 436
Query 153018 TACCCAGATATCATTA-----GCGCATCTAATAACCGCCGTATCACTGGTTCTAGCGTTC 153072
|| || |||||| | | | || || | | | |||| |||| ||||
Sbjct 437 TATCCGGATATCCTGAACTACGATCAGGTAGTGAAAG-----TCACCGGTT----CGTT- 486
Query 153073 CTGTATCTCCTATGGGTTGTCGCAGTTTCCTTAGCGTGTGGCATGATGATAACGGTAATG 153132
| | | || ||||| || ||||| ||||| |||||||| | |||| ||||| |
Sbjct 487 -TAAAACCCCGATGGGCTGCCGCAGCTTCCTCGGCGTGTGGGAAAATGAAAACGGCGAGC 545
Query 153133 AAATTCTGGATGGACGTAATAACCTTGGTGTGGTGACAATCAACCTCCCGCGCATTGCGA 153192
| || | ||||| ||||| ||||| || ||| | | | ||||| ||||| |||||
Sbjct 546 AGATCCACGATGGTCGTAACAACCTCGGCGTGATCAGCCTGAACCTGCCGCGTATTGC-- 603
Query 153193 TCGAAGCTGAAGCACAGGAAGATGAAGACGCACACGACGCATTCTGGCGCATCCTTGATG 153252
|| |||||| | | |||||| | | | |||||| | || ||||
Sbjct 604 TC----TGGAAGCAAAAGGCGATGAA---------GCCACCTTCTGGAAGCTGCTGGATG 650
Query 153253 AACGTCTGGATCTGTGCTTTGAAGCCCTGATGACTCGTATCGAAAGCCTACGCGGTGTTA 153312
||||||||| ||| | | || |||||||| ||||||| | || || || |
Sbjct 651 AACGTCTGGTGCTGGCACGTAAGGCGCTGATGACCCGTATCGCTCGTCTCGAAGGCGTGA 710
Query 153313 AAGCCAGTGTTGCGCCGATCCTGTACACAGAAGGTGCTTTTGGTGTCCGACTGAAACCGG 153372
|||| | || || |||||||| || | |||||||||| ||| || || || || | |
Sbjct 711 AAGCGCGCGTGGCCCCGATCCTCTATATGGAAGGTGCTTGTGGCGTGCGTCTCAATGCTG 770
Query 153373 ATGATGAAATTCTGGAACTGTTCAAAAATGGGCGTAGCTCTATCAGCCTTGGTTATATCG 153432
| ||||| || ||| | |||||||| || ||| ||||| || ||||| ||||
Sbjct 771 ACGATGATGTTTCTGAAATCTTCAAAAACGGTCGTGCGTCTATTTCGCTGGGTTACATCG 830
Query 153433 GACTACATGAAAC 153445
| | || |||||
Sbjct 831 GCATCCACGAAAC 843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563769110673120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |