Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_021529.2
Length=247511
Score E
Sequences producing significant alignments: (Bits) Value
seq732 165 1e-35
>seq732
Length=24842
Score = 165 bits (182), Expect = 1e-35
Identities = 312/459 (68%), Gaps = 0/459 (0%)
Strand=Plus/Plus
Query 172426 TACGACGCTTTTCAAACGTTTGAGTATCAAGTTAACACAATGCAGACTTCGAACGGTCAG 172485
||||| || || || || | ||||| |||| ||||| |||| || | |||||||||
Sbjct 155 TACGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAG 214
Query 172486 ACGCCATTCACGACGATTAACTTCGGTCTAGGTACATCGTGGGAAGAAAAGCTTATTCAG 172545
||||| || || || || ||||| || || |||||| || ||||||
Sbjct 215 ACGCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGGGAATCGCGCCTGATTCAG 274
Query 172546 AAATGCATTCTGCAAAATCGAATTGCTGGTCTAGGCAAGACAAAGAAAACAGCGATTTTC 172605
||| || |||| || || || || || || || || | ||||| ||| | |||
Sbjct 275 GAATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTTC 334
Query 172606 CCGAAACTTGTATTCACTATCAAAGATGGTGTGAACTTGAAAGAAGGCGATCCGTGTTAC 172665
|||||||| || || | || |||||| ||||| ||| ||||||||||| |||
Sbjct 335 CCGAAACTGGTGTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGAACTAC 394
Query 172666 GGCATTAAGAAGCTTGCACTTGAATGCGCAAGTAAGCGCATGTATCCAGATATCTTGAGC 172725
| ||| || |||| || || || |||||||| |||||||||||||| |||||| ||| |
Sbjct 395 GACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATCCTGAAC 454
Query 172726 TATGAAAAGCTAGTAGAAACAACTGGCGGGTTTAAGTCACCGATGGGATGTCGTTCATTC 172785
|| || || |||| || || || |||||| | |||||||| || || |||
Sbjct 455 TACGATCAGGTAGTGAAAGTCACCGGTTCGTTTAAAACCCCGATGGGCTGCCGCAGCTTC 514
Query 172786 TTAGGCGACTGGAAAAACGAAGATGGTGAAACTGTATTCGACGGTCGAAACAATCTAGGC 172845
| |||| ||| |||| ||| | || || | ||| ||||| ||||| || |||
Sbjct 515 CTCGGCGTGTGGGAAAATGAAAACGGCGAGCAGATCCACGATGGTCGTAACAACCTCGGC 574
Query 172846 GTTGTCTCGTTGAACATTCCCCGAATTGCAATTGAAGCA 172884
|| || ||||| | || || ||||| | ||||||
Sbjct 575 GTGATCAGCCTGAACCTGCCGCGTATTGCTCTGGAAGCA 613
Score = 123 bits (136), Expect = 4e-23
Identities = 231/337 (69%), Gaps = 2/337 (1%)
Strand=Plus/Plus
Query 173221 TGGAAAGAACTGACTGGTTACGGATTTAGTCTGTACAGCACACCAAGCGAATCGCTATGT 173280
||||||||| || ||||| || || ||||| |||||||| || || ||| || ||
Sbjct 944 TGGAAAGAAGAAACGGGTTATGGTTTCAGTCTCTACAGCACGCCGAGTGAAAACCTGTGC 1003
Query 173281 GATCGTTTCTGTCGTCTTGATCAAGAGAAGTACGGTATCATTACTGGTATCAATGACAAA 173340
|| || ||||| ||||| ||| | ||| || | | | || | | || |||
Sbjct 1004 GACCGCTTCTGCCGTCTCGATACTGCTGAGTTTGGCGTGGTGCCGGGCGTGACCGATAAA 1063
Query 173341 GACTACTATACAAACTCGTTCCACTTAGACGTATTCAAGAAAGTGAATCCGTTCGAGAAG 173400
| ||||| || ||| |||||| | || || ||||| ||||| |||| ||| |||
Sbjct 1064 GGTTACTACACCAACAGTTTCCACCTCGATGTGGAGAAGAAGGTGAACCCGTACGACAAG 1123
Query 173401 ATTGACTTTGAAGCATCGTACCCAGCATATGCAAACGGCGGTTTCATTTGCTATGCAGAG 173460
|| ||||||||||| | ||||| | || ||||| |||||||||||||| | |||
Sbjct 1124 ATCGACTTTGAAGCGCCTTACCCGCCGCTGGCGAACGGTGGTTTCATTTGCTACGGCGAG 1183
Query 173461 TTCCCGAACATGCGCGACAATATCAAAGGTCTAGAACGTGTATGGGATTA-TGCTCATAG 173519
| || ||||| | |||| | || | || ||| ||| |||||||| ||| ||
Sbjct 1184 TATCCAAACATTCAGCACAACCTGAAGGCGCTGGAAGATGTCTGGGATTACAGCTATCAG 1243
Query 173520 CAAAGTTGCTTACTTCGGTACAAACACACCGATTGAT 173556
| | || | || | ||| || || ||||||||||||
Sbjct 1244 C-ATGTACCGTATTACGGCACCAATACACCGATTGAT 1279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 791866060420960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |