Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq732 165 1e-35 >seq732 Length=24842 Score = 165 bits (182), Expect = 1e-35 Identities = 312/459 (68%), Gaps = 0/459 (0%) Strand=Plus/Plus Query 172426 TACGACGCTTTTCAAACGTTTGAGTATCAAGTTAACACAATGCAGACTTCGAACGGTCAG 172485 ||||| || || || || | ||||| |||| ||||| |||| || | ||||||||| Sbjct 155 TACGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAG 214 Query 172486 ACGCCATTCACGACGATTAACTTCGGTCTAGGTACATCGTGGGAAGAAAAGCTTATTCAG 172545 ||||| || || || || ||||| || || |||||| || |||||| Sbjct 215 ACGCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGGGAATCGCGCCTGATTCAG 274 Query 172546 AAATGCATTCTGCAAAATCGAATTGCTGGTCTAGGCAAGACAAAGAAAACAGCGATTTTC 172605 ||| || |||| || || || || || || || || | ||||| ||| | ||| Sbjct 275 GAATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTTC 334 Query 172606 CCGAAACTTGTATTCACTATCAAAGATGGTGTGAACTTGAAAGAAGGCGATCCGTGTTAC 172665 |||||||| || || | || |||||| ||||| ||| ||||||||||| ||| Sbjct 335 CCGAAACTGGTGTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGAACTAC 394 Query 172666 GGCATTAAGAAGCTTGCACTTGAATGCGCAAGTAAGCGCATGTATCCAGATATCTTGAGC 172725 | ||| || |||| || || || |||||||| |||||||||||||| |||||| ||| | Sbjct 395 GACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATCCTGAAC 454 Query 172726 TATGAAAAGCTAGTAGAAACAACTGGCGGGTTTAAGTCACCGATGGGATGTCGTTCATTC 172785 || || || |||| || || || |||||| | |||||||| || || ||| Sbjct 455 TACGATCAGGTAGTGAAAGTCACCGGTTCGTTTAAAACCCCGATGGGCTGCCGCAGCTTC 514 Query 172786 TTAGGCGACTGGAAAAACGAAGATGGTGAAACTGTATTCGACGGTCGAAACAATCTAGGC 172845 | |||| ||| |||| ||| | || || | ||| ||||| ||||| || ||| Sbjct 515 CTCGGCGTGTGGGAAAATGAAAACGGCGAGCAGATCCACGATGGTCGTAACAACCTCGGC 574 Query 172846 GTTGTCTCGTTGAACATTCCCCGAATTGCAATTGAAGCA 172884 || || ||||| | || || ||||| | |||||| Sbjct 575 GTGATCAGCCTGAACCTGCCGCGTATTGCTCTGGAAGCA 613 Score = 123 bits (136), Expect = 4e-23 Identities = 231/337 (69%), Gaps = 2/337 (1%) Strand=Plus/Plus Query 173221 TGGAAAGAACTGACTGGTTACGGATTTAGTCTGTACAGCACACCAAGCGAATCGCTATGT 173280 ||||||||| || ||||| || || ||||| |||||||| || || ||| || || Sbjct 944 TGGAAAGAAGAAACGGGTTATGGTTTCAGTCTCTACAGCACGCCGAGTGAAAACCTGTGC 1003 Query 173281 GATCGTTTCTGTCGTCTTGATCAAGAGAAGTACGGTATCATTACTGGTATCAATGACAAA 173340 || || ||||| ||||| ||| | ||| || | | | || | | || ||| Sbjct 1004 GACCGCTTCTGCCGTCTCGATACTGCTGAGTTTGGCGTGGTGCCGGGCGTGACCGATAAA 1063 Query 173341 GACTACTATACAAACTCGTTCCACTTAGACGTATTCAAGAAAGTGAATCCGTTCGAGAAG 173400 | ||||| || ||| |||||| | || || ||||| ||||| |||| ||| ||| Sbjct 1064 GGTTACTACACCAACAGTTTCCACCTCGATGTGGAGAAGAAGGTGAACCCGTACGACAAG 1123 Query 173401 ATTGACTTTGAAGCATCGTACCCAGCATATGCAAACGGCGGTTTCATTTGCTATGCAGAG 173460 || ||||||||||| | ||||| | || ||||| |||||||||||||| | ||| Sbjct 1124 ATCGACTTTGAAGCGCCTTACCCGCCGCTGGCGAACGGTGGTTTCATTTGCTACGGCGAG 1183 Query 173461 TTCCCGAACATGCGCGACAATATCAAAGGTCTAGAACGTGTATGGGATTA-TGCTCATAG 173519 | || ||||| | |||| | || | || ||| ||| |||||||| ||| || Sbjct 1184 TATCCAAACATTCAGCACAACCTGAAGGCGCTGGAAGATGTCTGGGATTACAGCTATCAG 1243 Query 173520 CAAAGTTGCTTACTTCGGTACAAACACACCGATTGAT 173556 | | || | || | ||| || || |||||||||||| Sbjct 1244 C-ATGTACCGTATTACGGCACCAATACACCGATTGAT 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791866060420960