Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq1947 592 5e-165 seq2590 154 4e-33 seq1207 154 4e-33 seq132 105 2e-18 seq1066 84.2 6e-12 >seq1947 Length=4488 Score = 592 bits (656), Expect = 5e-165 Identities = 335/338 (99%), Gaps = 1/338 (0%) Strand=Plus/Plus Query 39101 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 39160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3637 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 3696 Query 39161 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCCACG 39220 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 3697 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAACG 3756 Query 39221 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 39280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3757 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 3816 Query 39281 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 39340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3817 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 3876 Query 39341 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTGCCTGCT 39400 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 3877 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTG-CCGGAACTGCCTGCT 3935 Query 39401 CGTATAATGACTGCCCTGATCGCTGTGGAACATCACCC 39438 |||||||||||||||||||||||||||||||||||||| Sbjct 3936 CGTATAATGACTGCCCTGATCGCTGTGGAACATCACCC 3973 Score = 224 bits (248), Expect = 3e-54 Identities = 645/982 (66%), Gaps = 65/982 (7%) Strand=Plus/Minus Query 20581 TGTGTTATCGCTGTTGACTGGAGCGGTTACCCTTTTCAGGAATATCATGTCCTTCGTGCC 20640 ||||| || || || |||||||| || || || | ||||| ||||||| ||||||||| Sbjct 3618 TGTGTAATAGCCGTAGACTGGAGTGGCTATCCCTCCCAGGAGCATCATGTTCTTCGTGCC 3559 Query 20641 AGCCTCCTCTGCGACGGTCGCTCTATCCCCCTGATGAGTCAGGTCTTCCCGTC---aaaa 20697 ||||| || || ||||| || || || || | ||||| |||| | || || |||| Sbjct 3558 AGCCTTCTGTGTGACGGGCGTTCCATTCCGTTATTGAGTAAGGTTGTTCCTTCTGAAAAA 3499 Query 20698 aaaaaTAACGAGGCGGTGGAAATCGCTTTTCTGGATGCGCTTTCCGGGGCCATTTCT--C 20755 ||||||| | | || | ||| || ||| | ||| | | || || | Sbjct 3498 CAAAATAATCCATTGATACAACATGATTTCCTTGATTCCCTTGCT----CAATCCCTGCC 3443 Query 20756 CCCGGACTC--GTGTTGTTATTGTTACTGATGCTGGTTTTCAAAGTGCATGGTTCCGTCA 20813 ||| || | | ||| ||||||| || |||||||| ||||| || |||||||| | || Sbjct 3442 CCCCGATGCCAGGGTTATTATTGTCACGGATGCTGGATTTCAGAGCGCATGGTTTCACCA 3383 Query 20814 TATCAAATCACAGGGATGGGATTTTATTGGTCGTATCAGGGGGGTAGTGAAGTTCAGGCT 20873 ||| | || | ||| ||||||||||||||||| ||||| | | | |||||| Sbjct 3382 TATTACTTCTCTGGGCTGGGATTTTATTGGTCGGATCAGA-----AATAACGTTCAG--- 3331 Query 20874 GGATAGTGACAAAGATAAGTGGCTGGACA------TAAAAATGTGCAGGGGGAGTTCAGA 20927 || || | ||||| || || | ||||| ||| || || | || Sbjct 3330 ---TATTGCCTC-GATAACGCGCCTGAAAGATGGTTAAAAGTGTC---GGATAGCCCTGA 3278 Query 20928 G-GCAAAATACC--------TGGAGACGGGAACCCTGGCCC------GGAAAAAACGCTC 20972 | |||| ||| ||| | | |||| |||| |||||||| || Sbjct 3277 ATGTAAAACACCGGAATATATGGGGGCTGGAAGGCTGGTTAAAGAAAGGAAAAAAAGCAT 3218 Query 20973 GCAGTGTGAAGGACATTTTTATCTTTATAAACATTCACCTAAAGGCAGAAAAAGCAGGCG 21032 | | || |||||||| ||||| | || | ||||| |||||| | || Sbjct 3217 CCGG------GGGCATTTTTACACCTATAAGAAATCGGCAAAAGGGCGAAAAAAGAAACG 3164 Query 21033 TGCCAGAGGGAGGCCGGGCTTACCAACAACGGAAAAAGAACAAA---AAGCCGCAGGCAG 21089 | | | ||| | || ||| | ||| || |||||||| | || | ||| | Sbjct 3163 TTCGAAAGGTCAGAGTGGTTTAAACAAAACAGACAAAGAACAGAGCAAATCAGCA---AA 3107 Query 21090 AGAACCATGGTTAATATTCAGCAATACAGCTGAGTTTAATGCCaaaaaaaTCATGAAACT 21149 |||| | ||||| || ||||||| |||| ||| || | || | ||||||| || | Sbjct 3106 AGAAGCTTGGTTGATCTTCAGCAGTACAAATGACTTCAGAGCGCGAGAAATCATCAAGTT 3047 Query 21150 GTACAGTCGAAGAATGCAGATAGAGCAAAACTTTCGGGATGAAAAAAGTGAACGCTTTGG 21209 |||||||| ||||||||||||||||||||||||| |||||||| | | ||||| || Sbjct 3046 ATACAGTCGGCGAATGCAGATAGAGCAAAACTTTCGTGATGAAAAGAACGGGCGCTTCGG 2987 Query 21210 TTTTGGCCTTCGGGCGAGCAGAAGTCGGAGGGGAGAGCGTTTTCTGGTATTAAGTCTACT 21269 ||||| |||||||| |||| |||||| || | ||||||| | ||||| || Sbjct 2986 ATTTGGTCTTCGGGCCAGCAAAAGTCGTTCAACAGGAAGAATTCTGGTTCTGAGTCTGCT 2927 Query 21270 GGTTACACTGGCCAGTATCGTACTCTGGCTACTTGGTTATCATTTTGAAAATAAAGGATT 21329 || || || || ||||||| | ||| |||| |||||||| |||||||||||| || Sbjct 2926 GGCAACGTTGAGCACTATCGTAATGTGGTTACTCGGTTATCACGCTGAAAATAAAGGGTT 2867 Query 21330 TCATTTAAAGTATCAGGCTAATAGTCTCAAAAAACGAAGAGTATTGTCTTTTCTGACGCT 21389 || | || ||||||||||| || | ||| || | || | || | ||||||| | Sbjct 2866 ACACCTGAAATATCAGGCTAACAGCATTAAATCCCGGCGGGTTATCTCATATCTGACGTT 2807 Query 21390 GGCTGAAAACGTCCT--GAGATTTAACCCTGAACTTCTACGACGAGCACAACCTGAAAAG 21447 || | || || || || | | | || | || || ||||| || | |||| | Sbjct 2806 AGCGAAGAATGTTCTTCGACACTCGCCACTTA--TTTTAAGACGAACAGTA-CTGAGCAC 2750 Query 21448 A-TATTGTGCCGGTTGGCCAGCACTTACCGAAGTATGGTGCTGGCTTACTGATGAAAATT 21506 | | | || || |||| || ||||||| ||||||||||| ||| | |||| Sbjct 2749 AGTTCTAAACCATCTGTCCAGAACCTACCGAAATATGGTGCTGGTTTATTAGCAGTAATT 2690 Query 21507 TTCTGGGGATCCCTCAGCCTTT 21528 || |||||||||||||||| || Sbjct 2689 TTGTGGGGATCCCTCAGCCCTT 2668 >seq2590 Length=2515 Score = 154 bits (170), Expect = 4e-33 Identities = 209/287 (73%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 20225 TGAGGAATCCCCAGAAAAGAAGACAGGCAGAGGGAGGCTTGTGATCTAA-TGATTGCGCT 20283 |||||||||||||||||| |||||||||| || ||| |||||||||| |||||| ||| Sbjct 1424 TGAGGAATCCCCAGAAAACAAGACAGGCATAGTGAG--ATGTGATCTAATTGATTGTGCT 1367 Query 20284 AACAAATTCAATGAGATCACCTCTATGCCTGCCCGTAAAGTATGCCAGACTTT--TTTCC 20341 ||||| ||||| ||||||||| |||||||||| ||| | ||||||| | ||| || | Sbjct 1366 AACAATTTCAAGGAGATCACCACTATGCCTGCACGTTCATTATGCCAAAATTTCCTTAAC 1307 Query 20342 GTAATGCTTTAGCTTCCACGCATCAGTATCGACAAAATGCCATTATTGATTCTGCTGCTG 20401 || | | || | ||||| || || ||||| | | ||||| | || || Sbjct 1306 AACATAC--TGGCCCCTTTGCATCTTTACCGTCAAAAATCACTGATTGACGCAACTAATG 1249 Query 20402 CTTTAGTCGGTGGCGCATCTCTTTCTCTTACCAGCATTGGCCGGCATTTACCCGGTCCTG 20461 || || | |||||| || || | |||||||| || || || |||||| ||||| | | Sbjct 1248 CTGTAATAAATGGCGCTTCCCTCACACTTACCAGTATCGGGCGTCATTTAACCGGTACGG 1189 Query 20462 CTCGCGTGAAAGATAAAATAAAACGCGTTGACCGTCTGTTGGGTAAT 20508 | || ||| | |||||||| || || || || |||||||| ||| Sbjct 1188 CATCAGTTAAAAACAAAATAAAGCGGGTGGATCGACTGTTGGGGAAT 1142 >seq1207 Length=11574 Score = 154 bits (170), Expect = 4e-33 Identities = 209/287 (73%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 20225 TGAGGAATCCCCAGAAAAGAAGACAGGCAGAGGGAGGCTTGTGATCTAA-TGATTGCGCT 20283 |||||||||||||||||| |||||||||| || ||| |||||||||| |||||| ||| Sbjct 11292 TGAGGAATCCCCAGAAAACAAGACAGGCATAGTGAG--ATGTGATCTAATTGATTGTGCT 11349 Query 20284 AACAAATTCAATGAGATCACCTCTATGCCTGCCCGTAAAGTATGCCAGACTTT--TTTCC 20341 ||||| ||||| ||||||||| |||||||||| ||| | ||||||| | ||| || | Sbjct 11350 AACAATTTCAAGGAGATCACCACTATGCCTGCACGTTCATTATGCCAAAATTTCCTTAAC 11409 Query 20342 GTAATGCTTTAGCTTCCACGCATCAGTATCGACAAAATGCCATTATTGATTCTGCTGCTG 20401 || | | || | ||||| || || ||||| | | ||||| | || || Sbjct 11410 AACATAC--TGGCCCCTTTGCATCTTTACCGTCAAAAATCACTGATTGACGCAACTAATG 11467 Query 20402 CTTTAGTCGGTGGCGCATCTCTTTCTCTTACCAGCATTGGCCGGCATTTACCCGGTCCTG 20461 || || | |||||| || || | |||||||| || || || |||||| ||||| | | Sbjct 11468 CTGTAATAAATGGCGCTTCCCTCACACTTACCAGTATCGGGCGTCATTTAACCGGTACGG 11527 Query 20462 CTCGCGTGAAAGATAAAATAAAACGCGTTGACCGTCTGTTGGGTAAT 20508 | || ||| | |||||||| || || || || |||||||| ||| Sbjct 11528 CATCAGTTAAAAACAAAATAAAGCGGGTGGATCGACTGTTGGGGAAT 11574 >seq132 Length=122212 Score = 105 bits (116), Expect = 2e-18 Identities = 85/99 (86%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 23 GGGAGGGGCGGGTCAAATCCCTGCGG-CCTGACGTCTTCCGGACTGCCCGCCCCATCGtt 81 |||||||| || |||||| |||| ||||| | ||| |||||||||||||||||||| Sbjct 120034 GGGAGGGGGAGGCCAAATCTCTGCAATCCTGA-GCCTTAAGGACTGCCCGCCCCATCGTT 119976 Query 82 tttttATACCCGCGAAAAATGAAATTTAA-CCAGGAGTG 119 ||||||||||||||||||||||||||||| || || ||| Sbjct 119975 TTTTTATACCCGCGAAAAATGAAATTTAATCCGGGCGTG 119937 >seq1066 Length=13853 Score = 84.2 bits (92), Expect = 6e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 37259 CAAAAATTATTGTATCGTGTTAAGAGTGGTTACTTCGCCACACAGCTTAAACCCGCCGTC 37318 ||||||| | || |||||||||||||||||||||||||||| |||||||||||| Sbjct 1907 CAAAAATGCTATTAGTGTGTTAAGAGTGGTTACTTCGCCACACAACTTAAACCCGCCACT 1848 Query 37319 GAGCGGGTTTT 37329 ||||||||||| Sbjct 1847 GAGCGGGTTTT 1837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132591855937464