Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_021857.1
Length=41475
Score E
Sequences producing significant alignments: (Bits) Value
seq1947 592 5e-165
seq2590 154 4e-33
seq1207 154 4e-33
seq132 105 2e-18
seq1066 84.2 6e-12
>seq1947
Length=4488
Score = 592 bits (656), Expect = 5e-165
Identities = 335/338 (99%), Gaps = 1/338 (0%)
Strand=Plus/Plus
Query 39101 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 39160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3637 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 3696
Query 39161 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCCACG 39220
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 3697 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAACG 3756
Query 39221 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 39280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3757 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 3816
Query 39281 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 39340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3817 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 3876
Query 39341 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTGCCTGCT 39400
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3877 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTG-CCGGAACTGCCTGCT 3935
Query 39401 CGTATAATGACTGCCCTGATCGCTGTGGAACATCACCC 39438
||||||||||||||||||||||||||||||||||||||
Sbjct 3936 CGTATAATGACTGCCCTGATCGCTGTGGAACATCACCC 3973
Score = 224 bits (248), Expect = 3e-54
Identities = 645/982 (66%), Gaps = 65/982 (7%)
Strand=Plus/Minus
Query 20581 TGTGTTATCGCTGTTGACTGGAGCGGTTACCCTTTTCAGGAATATCATGTCCTTCGTGCC 20640
||||| || || || |||||||| || || || | ||||| ||||||| |||||||||
Sbjct 3618 TGTGTAATAGCCGTAGACTGGAGTGGCTATCCCTCCCAGGAGCATCATGTTCTTCGTGCC 3559
Query 20641 AGCCTCCTCTGCGACGGTCGCTCTATCCCCCTGATGAGTCAGGTCTTCCCGTC---aaaa 20697
||||| || || ||||| || || || || | ||||| |||| | || || ||||
Sbjct 3558 AGCCTTCTGTGTGACGGGCGTTCCATTCCGTTATTGAGTAAGGTTGTTCCTTCTGAAAAA 3499
Query 20698 aaaaaTAACGAGGCGGTGGAAATCGCTTTTCTGGATGCGCTTTCCGGGGCCATTTCT--C 20755
||||||| | | || | ||| || ||| | ||| | | || || |
Sbjct 3498 CAAAATAATCCATTGATACAACATGATTTCCTTGATTCCCTTGCT----CAATCCCTGCC 3443
Query 20756 CCCGGACTC--GTGTTGTTATTGTTACTGATGCTGGTTTTCAAAGTGCATGGTTCCGTCA 20813
||| || | | ||| ||||||| || |||||||| ||||| || |||||||| | ||
Sbjct 3442 CCCCGATGCCAGGGTTATTATTGTCACGGATGCTGGATTTCAGAGCGCATGGTTTCACCA 3383
Query 20814 TATCAAATCACAGGGATGGGATTTTATTGGTCGTATCAGGGGGGTAGTGAAGTTCAGGCT 20873
||| | || | ||| ||||||||||||||||| ||||| | | | ||||||
Sbjct 3382 TATTACTTCTCTGGGCTGGGATTTTATTGGTCGGATCAGA-----AATAACGTTCAG--- 3331
Query 20874 GGATAGTGACAAAGATAAGTGGCTGGACA------TAAAAATGTGCAGGGGGAGTTCAGA 20927
|| || | ||||| || || | ||||| ||| || || | ||
Sbjct 3330 ---TATTGCCTC-GATAACGCGCCTGAAAGATGGTTAAAAGTGTC---GGATAGCCCTGA 3278
Query 20928 G-GCAAAATACC--------TGGAGACGGGAACCCTGGCCC------GGAAAAAACGCTC 20972
| |||| ||| ||| | | |||| |||| |||||||| ||
Sbjct 3277 ATGTAAAACACCGGAATATATGGGGGCTGGAAGGCTGGTTAAAGAAAGGAAAAAAAGCAT 3218
Query 20973 GCAGTGTGAAGGACATTTTTATCTTTATAAACATTCACCTAAAGGCAGAAAAAGCAGGCG 21032
| | || |||||||| ||||| | || | ||||| |||||| | ||
Sbjct 3217 CCGG------GGGCATTTTTACACCTATAAGAAATCGGCAAAAGGGCGAAAAAAGAAACG 3164
Query 21033 TGCCAGAGGGAGGCCGGGCTTACCAACAACGGAAAAAGAACAAA---AAGCCGCAGGCAG 21089
| | | ||| | || ||| | ||| || |||||||| | || | ||| |
Sbjct 3163 TTCGAAAGGTCAGAGTGGTTTAAACAAAACAGACAAAGAACAGAGCAAATCAGCA---AA 3107
Query 21090 AGAACCATGGTTAATATTCAGCAATACAGCTGAGTTTAATGCCaaaaaaaTCATGAAACT 21149
|||| | ||||| || ||||||| |||| ||| || | || | ||||||| || |
Sbjct 3106 AGAAGCTTGGTTGATCTTCAGCAGTACAAATGACTTCAGAGCGCGAGAAATCATCAAGTT 3047
Query 21150 GTACAGTCGAAGAATGCAGATAGAGCAAAACTTTCGGGATGAAAAAAGTGAACGCTTTGG 21209
|||||||| ||||||||||||||||||||||||| |||||||| | | ||||| ||
Sbjct 3046 ATACAGTCGGCGAATGCAGATAGAGCAAAACTTTCGTGATGAAAAGAACGGGCGCTTCGG 2987
Query 21210 TTTTGGCCTTCGGGCGAGCAGAAGTCGGAGGGGAGAGCGTTTTCTGGTATTAAGTCTACT 21269
||||| |||||||| |||| |||||| || | ||||||| | ||||| ||
Sbjct 2986 ATTTGGTCTTCGGGCCAGCAAAAGTCGTTCAACAGGAAGAATTCTGGTTCTGAGTCTGCT 2927
Query 21270 GGTTACACTGGCCAGTATCGTACTCTGGCTACTTGGTTATCATTTTGAAAATAAAGGATT 21329
|| || || || ||||||| | ||| |||| |||||||| |||||||||||| ||
Sbjct 2926 GGCAACGTTGAGCACTATCGTAATGTGGTTACTCGGTTATCACGCTGAAAATAAAGGGTT 2867
Query 21330 TCATTTAAAGTATCAGGCTAATAGTCTCAAAAAACGAAGAGTATTGTCTTTTCTGACGCT 21389
|| | || ||||||||||| || | ||| || | || | || | ||||||| |
Sbjct 2866 ACACCTGAAATATCAGGCTAACAGCATTAAATCCCGGCGGGTTATCTCATATCTGACGTT 2807
Query 21390 GGCTGAAAACGTCCT--GAGATTTAACCCTGAACTTCTACGACGAGCACAACCTGAAAAG 21447
|| | || || || || | | | || | || || ||||| || | |||| |
Sbjct 2806 AGCGAAGAATGTTCTTCGACACTCGCCACTTA--TTTTAAGACGAACAGTA-CTGAGCAC 2750
Query 21448 A-TATTGTGCCGGTTGGCCAGCACTTACCGAAGTATGGTGCTGGCTTACTGATGAAAATT 21506
| | | || || |||| || ||||||| ||||||||||| ||| | ||||
Sbjct 2749 AGTTCTAAACCATCTGTCCAGAACCTACCGAAATATGGTGCTGGTTTATTAGCAGTAATT 2690
Query 21507 TTCTGGGGATCCCTCAGCCTTT 21528
|| |||||||||||||||| ||
Sbjct 2689 TTGTGGGGATCCCTCAGCCCTT 2668
>seq2590
Length=2515
Score = 154 bits (170), Expect = 4e-33
Identities = 209/287 (73%), Gaps = 7/287 (2%)
Strand=Plus/Minus
Query 20225 TGAGGAATCCCCAGAAAAGAAGACAGGCAGAGGGAGGCTTGTGATCTAA-TGATTGCGCT 20283
|||||||||||||||||| |||||||||| || ||| |||||||||| |||||| |||
Sbjct 1424 TGAGGAATCCCCAGAAAACAAGACAGGCATAGTGAG--ATGTGATCTAATTGATTGTGCT 1367
Query 20284 AACAAATTCAATGAGATCACCTCTATGCCTGCCCGTAAAGTATGCCAGACTTT--TTTCC 20341
||||| ||||| ||||||||| |||||||||| ||| | ||||||| | ||| || |
Sbjct 1366 AACAATTTCAAGGAGATCACCACTATGCCTGCACGTTCATTATGCCAAAATTTCCTTAAC 1307
Query 20342 GTAATGCTTTAGCTTCCACGCATCAGTATCGACAAAATGCCATTATTGATTCTGCTGCTG 20401
|| | | || | ||||| || || ||||| | | ||||| | || ||
Sbjct 1306 AACATAC--TGGCCCCTTTGCATCTTTACCGTCAAAAATCACTGATTGACGCAACTAATG 1249
Query 20402 CTTTAGTCGGTGGCGCATCTCTTTCTCTTACCAGCATTGGCCGGCATTTACCCGGTCCTG 20461
|| || | |||||| || || | |||||||| || || || |||||| ||||| | |
Sbjct 1248 CTGTAATAAATGGCGCTTCCCTCACACTTACCAGTATCGGGCGTCATTTAACCGGTACGG 1189
Query 20462 CTCGCGTGAAAGATAAAATAAAACGCGTTGACCGTCTGTTGGGTAAT 20508
| || ||| | |||||||| || || || || |||||||| |||
Sbjct 1188 CATCAGTTAAAAACAAAATAAAGCGGGTGGATCGACTGTTGGGGAAT 1142
>seq1207
Length=11574
Score = 154 bits (170), Expect = 4e-33
Identities = 209/287 (73%), Gaps = 7/287 (2%)
Strand=Plus/Plus
Query 20225 TGAGGAATCCCCAGAAAAGAAGACAGGCAGAGGGAGGCTTGTGATCTAA-TGATTGCGCT 20283
|||||||||||||||||| |||||||||| || ||| |||||||||| |||||| |||
Sbjct 11292 TGAGGAATCCCCAGAAAACAAGACAGGCATAGTGAG--ATGTGATCTAATTGATTGTGCT 11349
Query 20284 AACAAATTCAATGAGATCACCTCTATGCCTGCCCGTAAAGTATGCCAGACTTT--TTTCC 20341
||||| ||||| ||||||||| |||||||||| ||| | ||||||| | ||| || |
Sbjct 11350 AACAATTTCAAGGAGATCACCACTATGCCTGCACGTTCATTATGCCAAAATTTCCTTAAC 11409
Query 20342 GTAATGCTTTAGCTTCCACGCATCAGTATCGACAAAATGCCATTATTGATTCTGCTGCTG 20401
|| | | || | ||||| || || ||||| | | ||||| | || ||
Sbjct 11410 AACATAC--TGGCCCCTTTGCATCTTTACCGTCAAAAATCACTGATTGACGCAACTAATG 11467
Query 20402 CTTTAGTCGGTGGCGCATCTCTTTCTCTTACCAGCATTGGCCGGCATTTACCCGGTCCTG 20461
|| || | |||||| || || | |||||||| || || || |||||| ||||| | |
Sbjct 11468 CTGTAATAAATGGCGCTTCCCTCACACTTACCAGTATCGGGCGTCATTTAACCGGTACGG 11527
Query 20462 CTCGCGTGAAAGATAAAATAAAACGCGTTGACCGTCTGTTGGGTAAT 20508
| || ||| | |||||||| || || || || |||||||| |||
Sbjct 11528 CATCAGTTAAAAACAAAATAAAGCGGGTGGATCGACTGTTGGGGAAT 11574
>seq132
Length=122212
Score = 105 bits (116), Expect = 2e-18
Identities = 85/99 (86%), Gaps = 3/99 (3%)
Strand=Plus/Minus
Query 23 GGGAGGGGCGGGTCAAATCCCTGCGG-CCTGACGTCTTCCGGACTGCCCGCCCCATCGtt 81
|||||||| || |||||| |||| ||||| | ||| ||||||||||||||||||||
Sbjct 120034 GGGAGGGGGAGGCCAAATCTCTGCAATCCTGA-GCCTTAAGGACTGCCCGCCCCATCGTT 119976
Query 82 tttttATACCCGCGAAAAATGAAATTTAA-CCAGGAGTG 119
||||||||||||||||||||||||||||| || || |||
Sbjct 119975 TTTTTATACCCGCGAAAAATGAAATTTAATCCGGGCGTG 119937
>seq1066
Length=13853
Score = 84.2 bits (92), Expect = 6e-12
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 37259 CAAAAATTATTGTATCGTGTTAAGAGTGGTTACTTCGCCACACAGCTTAAACCCGCCGTC 37318
||||||| | || |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1907 CAAAAATGCTATTAGTGTGTTAAGAGTGGTTACTTCGCCACACAACTTAAACCCGCCACT 1848
Query 37319 GAGCGGGTTTT 37329
|||||||||||
Sbjct 1847 GAGCGGGTTTT 1837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132591855937464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |