Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq150 100 3e-15 seq867 98.7 1e-14 seq949 89.7 6e-12 seq117 89.7 6e-12 >seq150 Length=111118 Score = 100 bits (110), Expect = 3e-15 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1254354 TCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGC 1254413 |||||| ||| | || || || || ||||| ||||| || | ||| || || | || Sbjct 80318 TCGCCGGGCAGCAGCAAACGAACTGCTGTCTGAATCTCACGGGAGCCTATTGTATGACGA 80259 Query 1254414 TTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACA 1254473 ||||| | || || ||||| || |||||||| ||||| |||| | |||| ||| Sbjct 80258 TTGTTATACTGTGCTAGACGAGAAGCTTCGGTGCCAATGCGATCGAAGGTATCGTAAACA 80199 Query 1254474 AACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTG 1254533 || |||||||| ||||| | ||| || |||||| |||||||||||| ||||| Sbjct 80198 AAACTGTTCATGATAGACATGGCTTTGCTGCTGATGCCGGTGTCGGGGTGCACTTGCTTC 80139 Query 1254534 AGCACCTTGTAGATG 1254548 |||| ||| || ||| Sbjct 80138 AGCAACTTATAAATG 80124 >seq867 Length=18988 Score = 98.7 bits (108), Expect = 1e-14 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || |||||||| |||||||| | | | |||||| | || ||||| | || ||| Sbjct 14389 AGACGGACGGCGGTTTGGATCTCTCTTGAACTGATCGTATGTCGGTTGTTGTAATGAGCC 14448 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || || ||||||| || || || |||| || ||| || ||||| ||||| | Sbjct 14449 AGGCGAGATGCCTCGGCACCAATTCGATCGAACACGTCATTCACAAAGCTATTCATTATT 14508 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| ||| || ||| || |||||| || || |||||||| |||||||||||| Sbjct 14509 GACATCGCTTTGCTGCTGATTCCTGTGTCGGGATGAACTTGCTTGAGAACCTTGTAGATG 14568 Query 1254549 AACG 1254552 ||| Sbjct 14569 TACG 14572 >seq949 Length=16576 Score = 89.7 bits (98), Expect = 6e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || |||||||| |||||||| | | | |||||||| || || || | || ||| Sbjct 3902 AGACGGACGGCGGTTTGGATCTCTCTTGAACTGATCGTGTGTCGGTTATTGTAATGAGCC 3843 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 | || ||||||| || || || |||| || ||| || ||||| ||||| | Sbjct 3842 AAGCGAGATGCCTCGGCACCAATTCGATCGAACACGTCATTCACAAAGCTATTCATTATT 3783 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| ||| | ||| || |||||| || || |||||||| |||||||||||| Sbjct 3782 GACATCGCTTTGCTACTGATTCCTGTGTCGGGATGAACTTGCTTGAGAACCTTGTAGATG 3723 Query 1254549 AACGACG 1254555 ||| || Sbjct 3722 TACGTCG 3716 >seq117 Length=129223 Score = 89.7 bits (98), Expect = 6e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254351 AGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTG 1254410 || || ||| ||| | || || ||||| || || || || || | || |||||| || Sbjct 90565 AGCTCACCGGGCAATAGAAGACGAACGGCCGTTTGAATTTCACGAGAGCTGATCGTACTG 90624 Query 1254411 CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1254470 || | ||| || |||||||| ||||||| | ||||| |||| | ||||||| Sbjct 90625 CGTTGGTTAATCTGAGCCAGACGAGACGCCTCGGCAGCAATGCGCTCGAATACGTCGTTG 90684 Query 1254471 ACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1254530 ||||| ||||||| ||||| | ||| || ||||||| || || || |||||| Sbjct 90685 ACAAAACTATTCATGATTGACATTGCTTTGCTGCTGATGCCCGTATCCGGATGAACCTGC 90744 Query 1254531 TTGAGCACCTTGTAGAT 1254547 || | ||| |||||||| Sbjct 90745 TTTAACACTTTGTAGAT 90761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106798139177452