Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq150 100 3e-15
seq867 98.7 1e-14
seq949 89.7 6e-12
seq117 89.7 6e-12
>seq150
Length=111118
Score = 100 bits (110), Expect = 3e-15
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 1254354 TCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGC 1254413
|||||| ||| | || || || || ||||| ||||| || | ||| || || | ||
Sbjct 80318 TCGCCGGGCAGCAGCAAACGAACTGCTGTCTGAATCTCACGGGAGCCTATTGTATGACGA 80259
Query 1254414 TTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACA 1254473
||||| | || || ||||| || |||||||| ||||| |||| | |||| |||
Sbjct 80258 TTGTTATACTGTGCTAGACGAGAAGCTTCGGTGCCAATGCGATCGAAGGTATCGTAAACA 80199
Query 1254474 AACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTG 1254533
|| |||||||| ||||| | ||| || |||||| |||||||||||| |||||
Sbjct 80198 AAACTGTTCATGATAGACATGGCTTTGCTGCTGATGCCGGTGTCGGGGTGCACTTGCTTC 80139
Query 1254534 AGCACCTTGTAGATG 1254548
|||| ||| || |||
Sbjct 80138 AGCAACTTATAAATG 80124
>seq867
Length=18988
Score = 98.7 bits (108), Expect = 1e-14
Identities = 132/184 (72%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428
|| || |||||||| |||||||| | | | |||||| | || ||||| | || |||
Sbjct 14389 AGACGGACGGCGGTTTGGATCTCTCTTGAACTGATCGTATGTCGGTTGTTGTAATGAGCC 14448
Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488
|| || ||||||| || || || |||| || ||| || ||||| ||||| |
Sbjct 14449 AGGCGAGATGCCTCGGCACCAATTCGATCGAACACGTCATTCACAAAGCTATTCATTATT 14508
Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548
||||||| ||| || ||| || |||||| || || |||||||| ||||||||||||
Sbjct 14509 GACATCGCTTTGCTGCTGATTCCTGTGTCGGGATGAACTTGCTTGAGAACCTTGTAGATG 14568
Query 1254549 AACG 1254552
|||
Sbjct 14569 TACG 14572
>seq949
Length=16576
Score = 89.7 bits (98), Expect = 6e-12
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428
|| || |||||||| |||||||| | | | |||||||| || || || | || |||
Sbjct 3902 AGACGGACGGCGGTTTGGATCTCTCTTGAACTGATCGTGTGTCGGTTATTGTAATGAGCC 3843
Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488
| || ||||||| || || || |||| || ||| || ||||| ||||| |
Sbjct 3842 AAGCGAGATGCCTCGGCACCAATTCGATCGAACACGTCATTCACAAAGCTATTCATTATT 3783
Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548
||||||| ||| | ||| || |||||| || || |||||||| ||||||||||||
Sbjct 3782 GACATCGCTTTGCTACTGATTCCTGTGTCGGGATGAACTTGCTTGAGAACCTTGTAGATG 3723
Query 1254549 AACGACG 1254555
||| ||
Sbjct 3722 TACGTCG 3716
>seq117
Length=129223
Score = 89.7 bits (98), Expect = 6e-12
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 1254351 AGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTG 1254410
|| || ||| ||| | || || ||||| || || || || || | || |||||| ||
Sbjct 90565 AGCTCACCGGGCAATAGAAGACGAACGGCCGTTTGAATTTCACGAGAGCTGATCGTACTG 90624
Query 1254411 CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1254470
|| | ||| || |||||||| ||||||| | ||||| |||| | |||||||
Sbjct 90625 CGTTGGTTAATCTGAGCCAGACGAGACGCCTCGGCAGCAATGCGCTCGAATACGTCGTTG 90684
Query 1254471 ACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1254530
||||| ||||||| ||||| | ||| || ||||||| || || || ||||||
Sbjct 90685 ACAAAACTATTCATGATTGACATTGCTTTGCTGCTGATGCCCGTATCCGGATGAACCTGC 90744
Query 1254531 TTGAGCACCTTGTAGAT 1254547
|| | ||| ||||||||
Sbjct 90745 TTTAACACTTTGTAGAT 90761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106798139177452
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |