Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_021861.1 Length=30910 Score E Sequences producing significant alignments: (Bits) Value seq729 109 1e-19 >seq729 Length=25020 Score = 109 bits (120), Expect = 1e-19 Identities = 130/175 (74%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 5110 GATTTTATTAACTGTGTTATCTGGCGACAACAAGCTGAAAATATGGCAAATTTCACACAT 5169 |||||||| || ||||| || ||||| || ||| |||| | | || |||| | | Sbjct 1187 GATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCGC 1128 Query 5170 AAAGGAAGCTTGATTGGTATCACTGGTAGAATCCAAACTCGAAACTATGAAAATCAACAA 5229 ||||||| | | ||| | ||||| | |||||||| |||| ||||||||||| ||| Sbjct 1127 AAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAATCAGCAA 1068 Query 5230 GGACAACGTGTTTACGTTACTGAAGTTGTTGCAGATAGTTTCCAACTTCTTGAAA 5284 || |||||||| || || || ||||||||||| || | ||||||| || ||| || Sbjct 1067 GGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAA-TTATTGGAA 1014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98785524446784