Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq223 114 1e-20 >seq223 Length=82600 Score = 114 bits (126), Expect = 1e-20 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | |||||||||||||| |||||||||||||| ||||| || | || Sbjct 43339 ATGCAGATATTTGTGAAAACGCTAACCGGCAAAACTATTACGCTGGAAGTTGAGCCGTCC 43280 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| || || ||| || ||||| || |||||||| ||||| ||||| Sbjct 43279 GATACCATTGATAACGTGAAGACGAAA-ATTCAAGATAAGGAAGGAATCCCTCCAGATCA 43221 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGG 24854 || || | ||||||||||| || ||||| Sbjct 43220 GCAGCGACTAATCTTTGCCGGTAAGTGGCTGG 43189 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||||||||| || || ||||| || || |||||||| || | | Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432 Query 24764 GACACAGTAGAAA-CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || |||||||||| || |||||||||||||| || || || ||||| Sbjct 42431 GACACCATTGAAAACGTTAAAACAAAA-ATACAAGACAAAGAAGGCATTCCACCTGATCA 42373 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || || || || ||||| || Sbjct 42372 GCAGCGATTAATTTTTGCTGG 42352 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| ||||| || || || |||||||| ||||| ||| | | Sbjct 42773 ATGCAGATATTCGTGAAAACTCTAACTGGCAAGACAATTACGCTGGAAGTGGAACCTTCG 42714 Query 24764 GACACAGTAGAAACGGTAAA-ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| ||||| || ||| || |||||||||||||| || || || ||||| Sbjct 42713 GATACTATTGAAAATGTAAAGACTAAA-ATACAAGACAAAGAAGGTATTCCGCCTGATCA 42655 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| || | |||||||| || Sbjct 42654 ACAGCGACTAATCTTTGCTGG 42634 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | || || |||||||| || |||||||| || | | Sbjct 41355 ATGCAAATATTTGTCAAAACATTGACAGGCAAAACTATAACTCTCGAAGTGGAGCCTTCG 41296 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || |||||||||||||| ||||| ||||| Sbjct 41295 GACACTATCGATAACGTGAAGGCCAAGATACAGGACAAAGAAGGAATTCCTCCTGATCAG 41236 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| |||| |||||||| Sbjct 41235 CAGCGTCTGATTTTTGCCGG 41216 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | |||||||| || || || |||||||| | ||||| || | | Sbjct 41637 ATGCAGATATTCGTGAAAACGCTGACAGGGAAGACTATTACTTTGGAAGTGGAGCCTTCG 41578 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||||| || || ||||||||||||||||| || || || || ||||| Sbjct 41577 GATACCATAGAAAATGTCAAGGCGAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 41518 Query 24824 CAACGTTTGATCTTTGCCGGGAAAC 24848 || || || || ||||| || |||| Sbjct 41517 CAGCGATTAATTTTTGCAGGTAAAC 41493 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| ||||||| ||||| || ||||| ||||| || | | Sbjct 42207 ATGCAAATTTTTGTGAAAACTTTAACCGGAAAAACAATAACGCTGGAAGTGGAGCCGTCG 42148 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| || || || || || ||||| || || || |||||| Sbjct 42147 GACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGTATTCCACCTGATCAA 42088 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||||| || ||||| || Sbjct 42087 CAACGTTTAATTTTTGCTGG 42068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449874227819680