Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq223 114 1e-20
>seq223
Length=82600
Score = 114 bits (126), Expect = 1e-20
Identities = 118/152 (78%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | |||||||||||||| |||||||||||||| ||||| || | ||
Sbjct 43339 ATGCAGATATTTGTGAAAACGCTAACCGGCAAAACTATTACGCTGGAAGTTGAGCCGTCC 43280
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || |||| || || ||| || ||||| || |||||||| ||||| |||||
Sbjct 43279 GATACCATTGATAACGTGAAGACGAAA-ATTCAAGATAAGGAAGGAATCCCTCCAGATCA 43221
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGG 24854
|| || | ||||||||||| || |||||
Sbjct 43220 GCAGCGACTAATCTTTGCCGGTAAGTGGCTGG 43189
Score = 98.7 bits (108), Expect = 9e-16
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||||||||| || || ||||| || || |||||||| || | |
Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432
Query 24764 GACACAGTAGAAA-CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | |||| || |||||||||| || |||||||||||||| || || || |||||
Sbjct 42431 GACACCATTGAAAACGTTAAAACAAAA-ATACAAGACAAAGAAGGCATTCCACCTGATCA 42373
Query 24823 ACAACGTTTGATCTTTGCCGG 24843
|| || || || ||||| ||
Sbjct 42372 GCAGCGATTAATTTTTGCTGG 42352
Score = 95.1 bits (104), Expect = 1e-14
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | ||||| ||||| || || || |||||||| ||||| ||| | |
Sbjct 42773 ATGCAGATATTCGTGAAAACTCTAACTGGCAAGACAATTACGCTGGAAGTGGAACCTTCG 42714
Query 24764 GACACAGTAGAAACGGTAAA-ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | |||| ||||| || ||| || |||||||||||||| || || || |||||
Sbjct 42713 GATACTATTGAAAATGTAAAGACTAAA-ATACAAGACAAAGAAGGTATTCCGCCTGATCA 42655
Query 24823 ACAACGTTTGATCTTTGCCGG 24843
||| || | |||||||| ||
Sbjct 42654 ACAGCGACTAATCTTTGCTGG 42634
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| | ||||| | || || |||||||| || |||||||| || | |
Sbjct 41355 ATGCAAATATTTGTCAAAACATTGACAGGCAAAACTATAACTCTCGAAGTGGAGCCTTCG 41296
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || |||||||||||||| ||||| |||||
Sbjct 41295 GACACTATCGATAACGTGAAGGCCAAGATACAGGACAAAGAAGGAATTCCTCCTGATCAG 41236
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| ||| |||| ||||||||
Sbjct 41235 CAGCGTCTGATTTTTGCCGG 41216
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | |||||||| || || || |||||||| | ||||| || | |
Sbjct 41637 ATGCAGATATTCGTGAAAACGCTGACAGGGAAGACTATTACTTTGGAAGTGGAGCCTTCG 41578
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || |||||| || || ||||||||||||||||| || || || || |||||
Sbjct 41577 GATACCATAGAAAATGTCAAGGCGAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 41518
Query 24824 CAACGTTTGATCTTTGCCGGGAAAC 24848
|| || || || ||||| || ||||
Sbjct 41517 CAGCGATTAATTTTTGCAGGTAAAC 41493
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| | ||||| ||||||| ||||| || ||||| ||||| || | |
Sbjct 42207 ATGCAAATTTTTGTGAAAACTTTAACCGGAAAAACAATAACGCTGGAAGTGGAGCCGTCG 42148
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || ||| || || || || || ||||| || || || ||||||
Sbjct 42147 GACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGTATTCCACCTGATCAA 42088
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|||||||| || ||||| ||
Sbjct 42087 CAACGTTTAATTTTTGCTGG 42068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449874227819680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |