Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq450 91.5 1e-13 >seq450 Length=45162 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/163 (73%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 || ||||| ||||| || | | || | || ||||| |||||| ||||| || || Sbjct 41079 GTTTCCGGATTGTCGCACTGTTGGCAAAGAACGAACTTTTTGATGAATCCATCCAGTAGC 41020 Query 34381 TCCTGTAACTTAACGGAG--TCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAAT 34438 ||||| ||||| | ||| ||||| ||| ||||||||| | ||||||||||| | Sbjct 41019 TCCTGCAACTT--CTGAGCATCGTGTTCGCCATTGACGATGTAGCGTTCGTTTTTAGTGT 40962 Query 34439 CGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGT 34481 ||| ||||| || |||||||| || || || ||||| ||||| Sbjct 40961 CGAATTGCGTCTGGGCGCCCAGTTCACAGCCAAAGTATTTTGT 40919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412820689056908