Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_022059.1
Length=77367
Score E
Sequences producing significant alignments: (Bits) Value
seq904 161 5e-35
>seq904
Length=17929
Score = 161 bits (178), Expect = 5e-35
Identities = 554/851 (65%), Gaps = 31/851 (4%)
Strand=Plus/Minus
Query 67558 TGTGGACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTA 67617
|||||| ||||| | ||||| ||| | | ||||| ||| || || | || |||
Sbjct 5169 TGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG-CAGGTGGTC 5111
Query 67618 T-CCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGT 67676
| |||| |||||| | || || |||||||| || || ||||| || || | ||| ||
Sbjct 5110 TGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGA 5051
Query 67677 GCCTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCG 67736
|| || | | | ||| || ||| | ||| | | || | ||||| || |
Sbjct 5050 CGCTGCAGGTGATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTG 4991
Query 67737 AACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGG 67796
|||| | || ||||| ||||| || || || ||| ||||||| || |
Sbjct 4990 AACACGCGCTGGACCCAATCTACGCACGTAAACTGGGCGTCGATATCGACAACCT----G 4935
Query 67797 TTGTGC----AGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAG 67852
||||| |||| ||||| ||||||||||| ||||| ||| |||| || |
Sbjct 4934 CTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGGCGCGT 4875
Query 67853 TCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAG 67912
||||||| || | | ||||| || ||||| |||||||| ||| |||| |||||
Sbjct 4874 TCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAA 4815
Query 67913 CTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCC 67972
||||||| || ||||| ||||| ||| | ||||| || || ||||| |||||
Sbjct 4814 ATCGAAGGCGAAATCGGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCG 4755
Query 67973 ATGCGCAAGCTGACCGGCACGATTGCCAGCA--CCAACACGCTCACCCTGTGGGTGAATC 68030
||||| |||||| | || | | |||| |||||||||| | | | || |
Sbjct 4754 ATGCGTAAGCTGGCGGGTA--ACCTGAAGCAGTCCAACACGCTGCTGATCTTCATCAACC 4697
Query 68031 AGCTGCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAATGAGACCACCACCGGTG 68087
|| | || ||| || || ||| | ||| |||| || ||||| |||||||
Sbjct 4696 AGATCCGTATGAAAATTGG---TGTGATGTTCGGTAACCCG---GAAACCACTACCGGTG 4643
Query 68088 GTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGA 68147
|||| || ||| ||||||||||| || ||| | || |||| | |||| | | | ||
Sbjct 4642 GTAACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGA 4583
Query 68148 AGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGG 68207
| || ||||| | | || || | | || |||||||| || || |||||||| | |
Sbjct 4582 AAGAGGGCGAAAACGTGGTGGGTAGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCG 4523
Query 68208 CGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGG 68267
| | ||| |||||||| || ||| |||||||||| || || | | | |
Sbjct 4522 CTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGAAGGTATCAACTTCTACG 4463
Query 68268 CCGAACTCCTCGACATGGCCGTTTCCCGAG-GGCTCATCAAGAAGTCTGGGGCCTGGTTC 68326
|||||| | ||| ||| || | ||| ||| ||| |||| | || || |||| |
Sbjct 4462 GCGAACTGGTTGACCTGGGCG-TAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTAC 4404
Query 68327 AAGTACGGGGACAAGAACATCGGCCAGGGCAAGCCCAA---GACCGTGCAGTGGCTGAAG 68383
| ||| | |||| ||||| ||||| || | || ||| ||| ||||||||
Sbjct 4403 AGCTACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGAC--TGC-CTGGCTGAAA 4347
Query 68384 GACAACCCGGA 68394
|| ||||||||
Sbjct 4346 GATAACCCGGA 4336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 247437066368448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |