Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq1599 111 3e-19 seq1066 86.0 1e-11 >seq1599 Length=6876 Score = 111 bits (122), Expect = 3e-19 Identities = 115/147 (78%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 122686 CATAGGCCCCATAGTCGAGCGGTTAAGACGCTTGCCTGTCACGCAAGAAATCGCGGGTTC 122745 || ||| ||| | || |||||||| ||| ||||||||| | ||||||||||| Sbjct 681 CAAAGGTCCCGTGGTGTAGCGGTTATCACGTCGCCCTGTCACGGCGAAGATCGCGGGTTC 740 Query 122746 GATTCCCGCTGGGGTCGCCATAGGACGTTAGCTCAGTTGGTTAGAGCATCTGACTTTTAA 122805 |||||||| ||| || | | |||||||||||||||| |||||||||||||||||| Sbjct 741 GATTCCCGTCGGGACCGTTAGACT-CGTTAGCTCAGTTGGT-AGAGCATCTGACTTTTAA 798 Query 122806 TCAGAGGGTCCTGGGTTCGAGTCCCAG 122832 |||||||||| |||||||| ||||| Sbjct 799 TCAGAGGGTCACTGGTTCGAG-CCCAG 824 >seq1066 Length=13853 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 120235 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCCTGATG 120294 ||||||||| || |||||||||||||||||||||||||||| | ||||||| || | | Sbjct 96 TAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAG 37 Query 120295 CCGGCACCATAT 120306 ||||||||||| Sbjct 36 TCGGCACCATAT 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825873893622240