Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_022096.1
Length=258139
Score E
Sequences producing significant alignments: (Bits) Value
seq1599 111 3e-19
seq1066 86.0 1e-11
>seq1599
Length=6876
Score = 111 bits (122), Expect = 3e-19
Identities = 115/147 (78%), Gaps = 3/147 (2%)
Strand=Plus/Plus
Query 122686 CATAGGCCCCATAGTCGAGCGGTTAAGACGCTTGCCTGTCACGCAAGAAATCGCGGGTTC 122745
|| ||| ||| | || |||||||| ||| ||||||||| | |||||||||||
Sbjct 681 CAAAGGTCCCGTGGTGTAGCGGTTATCACGTCGCCCTGTCACGGCGAAGATCGCGGGTTC 740
Query 122746 GATTCCCGCTGGGGTCGCCATAGGACGTTAGCTCAGTTGGTTAGAGCATCTGACTTTTAA 122805
|||||||| ||| || | | |||||||||||||||| ||||||||||||||||||
Sbjct 741 GATTCCCGTCGGGACCGTTAGACT-CGTTAGCTCAGTTGGT-AGAGCATCTGACTTTTAA 798
Query 122806 TCAGAGGGTCCTGGGTTCGAGTCCCAG 122832
|||||||||| |||||||| |||||
Sbjct 799 TCAGAGGGTCACTGGTTCGAG-CCCAG 824
>seq1066
Length=13853
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 120235 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCCTGATG 120294
||||||||| || |||||||||||||||||||||||||||| | ||||||| || | |
Sbjct 96 TAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAG 37
Query 120295 CCGGCACCATAT 120306
|||||||||||
Sbjct 36 TCGGCACCATAT 25
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 825873893622240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |