Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq150 131 3e-24 seq117 111 2e-18 >seq150 Length=111118 Score = 131 bits (144), Expect = 3e-24 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 1485461 TGGCATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTT 1485520 |||| | | ||||||| ||||| ||||| || ||||| || |||||| | || | Sbjct 80377 TGGCGTTGGTGTACTTTGTGACAGCCTTCGTGCCCTCACTCACAGCGTGCTTACTCAACT 80318 Query 1485521 CGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCT 1485580 ||||| ||| | || || || || ||||| ||||| |||| ||| || || | || | Sbjct 80317 CGCCGGGCAGCAGCAAACGAACTGCTGTCTGAATCTCACGGGAGCCTATTGTATGACGAT 80258 Query 1485581 TGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAA 1485640 ||||| | || || || || |||||||| ||||| |||| | |||| |||| Sbjct 80257 TGTTATACTGTGCTAGACGAGAAGCTTCGGTGCCAATGCGATCGAAGGTATCGTAAACAA 80198 Query 1485641 ACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGA 1485700 | ||||||||| ||||| | |||| || |||||| |||||||||||| ||||| | Sbjct 80197 AACTGTTCATGATAGACATGGCTTTGCTGCTGATGCCGGTGTCGGGGTGCACTTGCTTCA 80138 Query 1485701 GCACCTTGTAAA 1485712 ||| ||| |||| Sbjct 80137 GCAACTTATAAA 80126 >seq117 Length=129223 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| || ||||| || || | |||||| | | || || ||| ||| Sbjct 90518 TGTATTTGGTGACTGCTTTGGTCCCTTCGCTTATAGCGTGCTTTGAAAGCTCACCGGGCA 90577 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||| || || || || || | || |||||| |||| | |||| | Sbjct 90578 ATAGAAGACGAACGGCCGTTTGAATTTCACGAGAGCTGATCGTACTGCGTTGGTTAATCT 90637 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || ||||||| | ||||| |||| | |||||||||||| |||| Sbjct 90638 GAGCCAGACGAGACGCCTCGGCAGCAATGCGCTCGAATACGTCGTTGACAAAACTATTCA 90697 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | |||| || ||||||| || || || |||||||| | ||| |||| Sbjct 90698 TGATTGACATTGCTTTGCTGCTGATGCCCGTATCCGGATGAACCTGCTTTAACACTTTGT 90757 Query 1485710 A 1485710 | Sbjct 90758 A 90758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915804307324484