Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq150 131 3e-24
seq117 111 2e-18
>seq150
Length=111118
Score = 131 bits (144), Expect = 3e-24
Identities = 180/252 (71%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 1485461 TGGCATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTT 1485520
|||| | | ||||||| ||||| ||||| || ||||| || |||||| | || |
Sbjct 80377 TGGCGTTGGTGTACTTTGTGACAGCCTTCGTGCCCTCACTCACAGCGTGCTTACTCAACT 80318
Query 1485521 CGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCT 1485580
||||| ||| | || || || || ||||| ||||| |||| ||| || || | || |
Sbjct 80317 CGCCGGGCAGCAGCAAACGAACTGCTGTCTGAATCTCACGGGAGCCTATTGTATGACGAT 80258
Query 1485581 TGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAA 1485640
||||| | || || || || |||||||| ||||| |||| | |||| ||||
Sbjct 80257 TGTTATACTGTGCTAGACGAGAAGCTTCGGTGCCAATGCGATCGAAGGTATCGTAAACAA 80198
Query 1485641 ACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGA 1485700
| ||||||||| ||||| | |||| || |||||| |||||||||||| ||||| |
Sbjct 80197 AACTGTTCATGATAGACATGGCTTTGCTGCTGATGCCGGTGTCGGGGTGCACTTGCTTCA 80138
Query 1485701 GCACCTTGTAAA 1485712
||| ||| ||||
Sbjct 80137 GCAACTTATAAA 80126
>seq117
Length=129223
Score = 111 bits (122), Expect = 2e-18
Identities = 169/241 (70%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||| |||||||| || ||||| || || | |||||| | | || || ||| |||
Sbjct 90518 TGTATTTGGTGACTGCTTTGGTCCCTTCGCTTATAGCGTGCTTTGAAAGCTCACCGGGCA 90577
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || || ||||| || || || || || | || |||||| |||| | |||| |
Sbjct 90578 ATAGAAGACGAACGGCCGTTTGAATTTCACGAGAGCTGATCGTACTGCGTTGGTTAATCT 90637
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| ||||| || ||||||| | ||||| |||| | |||||||||||| ||||
Sbjct 90638 GAGCCAGACGAGACGCCTCGGCAGCAATGCGCTCGAATACGTCGTTGACAAAACTATTCA 90697
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| | |||| || ||||||| || || || |||||||| | ||| ||||
Sbjct 90698 TGATTGACATTGCTTTGCTGCTGATGCCCGTATCCGGATGAACCTGCTTTAACACTTTGT 90757
Query 1485710 A 1485710
|
Sbjct 90758 A 90758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915804307324484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |