Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_022749.1
Length=39758
Score E
Sequences producing significant alignments: (Bits) Value
seq1317 908 0.0
seq2540 776 0.0
seq1560 471 1e-128
seq132 89.7 1e-13
seq1066 87.8 5e-13
>seq1317
Length=9928
Score = 908 bits (1006), Expect = 0.0
Identities = 548/578 (95%), Gaps = 0/578 (0%)
Strand=Plus/Plus
Query 35377 CCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGAT 35436
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 CCGCCTCTCAGCCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGAT 60
Query 35437 GCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAAA 35496
| || || | || ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTAAAAA 120
Query 35497 ACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGC 35556
||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct 121 ACTCAGGCCGCAGTCGGTAACCTCGCGCATACAACCGGGCAGTGATGTGATTGTCTGCGC 180
Query 35557 GGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTA 35616
||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct 181 TGAAATGGACGAACAGTGGGGCTACGTCGGTGCTAAATCACGTCAGCGCTGGCTGTTTTA 240
Query 35617 CGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGC 35676
|||||||||||| | |||| ||||||||| |||||||| ||||||||||||||| ||||
Sbjct 241 CGCGTATGACAGGATACGGAGGACGGTTGTGGCGCACGTCTTCGGTGAACGCACTCTGGC 300
Query 35677 GACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGA 35736
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CACACTGGAGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGA 360
Query 35737 TGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATA 35796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATA 420
Query 35797 TACGCAGCGAATTGAGCGGCATAACCTAAATCTGAGGCAGCACCTGGCACGGCTGGGACG 35856
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 TACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACG 480
Query 35857 GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCT 35916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCT 540
Query 35917 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCC 35954
||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCC 578
>seq2540
Length=2625
Score = 776 bits (860), Expect = 0.0
Identities = 433/435 (99%), Gaps = 0/435 (0%)
Strand=Plus/Minus
Query 35519 TCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGC 35578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2625 TCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGC 2566
Query 35579 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAG 35638
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2565 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAG 2506
Query 35639 ACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGC 35698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2505 ACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGC 2446
Query 35699 CTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCC 35758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2445 CTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCC 2386
Query 35759 CGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCAT 35818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2385 CGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCAT 2326
Query 35819 AACCTAAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAA 35878
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2325 AACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAA 2266
Query 35879 TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAA 35938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2265 TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAA 2206
Query 35939 GTTGGAGTCATTACC 35953
|||||||||||||||
Sbjct 2205 GTTGGAGTCATTACC 2191
>seq1560
Length=7175
Score = 471 bits (522), Expect = 1e-128
Identities = 263/264 (99%), Gaps = 0/264 (0%)
Strand=Plus/Minus
Query 35183 GCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGT 35242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 GCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGT 207
Query 35243 GGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGG 35302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 GGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGG 147
Query 35303 CAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACT 35362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 CAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACT 87
Query 35363 GCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCAT 35422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 GCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCAT 27
Query 35423 GAATGGCGTTGGATGCCGGGCAAC 35446
||||||||||||||||||||||||
Sbjct 26 GAATGGCGTTGGATGCCGGGCAAC 3
>seq132
Length=122212
Score = 89.7 bits (98), Expect = 1e-13
Identities = 56/59 (95%), Gaps = 1/59 (2%)
Strand=Plus/Minus
Query 4 GGACTGCCCGCCCCATCGtttttttATACCCGCGAAAAATGAAATTTAA-CCAGGAGTG 61
||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 119995 GGACTGCCCGCCCCATCGTTTTTTTATACCCGCGAAAAATGAAATTTAATCCGGGCGTG 119937
>seq1066
Length=13853
Score = 87.8 bits (96), Expect = 5e-13
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 37504 ATTACTGTGTTAAGAGTGGTTACTTCGCCACACAGCTTAAACCCGCCGTCGAGCGGGTTT 37563
|||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1897 ATTAGTGTGTTAAGAGTGGTTACTTCGCCACACAACTTAAACCCGCCACTGAGCGGGTTT 1838
Query 37564 T 37564
|
Sbjct 1837 T 1837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127097727099840
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