Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq1317 908 0.0 seq2540 776 0.0 seq1560 471 1e-128 seq132 89.7 1e-13 seq1066 87.8 5e-13 >seq1317 Length=9928 Score = 908 bits (1006), Expect = 0.0 Identities = 548/578 (95%), Gaps = 0/578 (0%) Strand=Plus/Plus Query 35377 CCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGAT 35436 |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 CCGCCTCTCAGCCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGAT 60 Query 35437 GCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAAA 35496 | || || | || ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 GTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTAAAAA 120 Query 35497 ACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGC 35556 ||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct 121 ACTCAGGCCGCAGTCGGTAACCTCGCGCATACAACCGGGCAGTGATGTGATTGTCTGCGC 180 Query 35557 GGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTA 35616 ||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| Sbjct 181 TGAAATGGACGAACAGTGGGGCTACGTCGGTGCTAAATCACGTCAGCGCTGGCTGTTTTA 240 Query 35617 CGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGC 35676 |||||||||||| | |||| ||||||||| |||||||| ||||||||||||||| |||| Sbjct 241 CGCGTATGACAGGATACGGAGGACGGTTGTGGCGCACGTCTTCGGTGAACGCACTCTGGC 300 Query 35677 GACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGA 35736 || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CACACTGGAGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGA 360 Query 35737 TGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATA 35796 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATA 420 Query 35797 TACGCAGCGAATTGAGCGGCATAACCTAAATCTGAGGCAGCACCTGGCACGGCTGGGACG 35856 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 421 TACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACG 480 Query 35857 GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCT 35916 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCT 540 Query 35917 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCC 35954 |||||||||||||||||||||||||||||||||||||| Sbjct 541 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCC 578 >seq2540 Length=2625 Score = 776 bits (860), Expect = 0.0 Identities = 433/435 (99%), Gaps = 0/435 (0%) Strand=Plus/Minus Query 35519 TCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGC 35578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2625 TCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGC 2566 Query 35579 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAG 35638 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2565 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAG 2506 Query 35639 ACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGC 35698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2505 ACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGC 2446 Query 35699 CTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCC 35758 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2445 CTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCC 2386 Query 35759 CGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCAT 35818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2385 CGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCAT 2326 Query 35819 AACCTAAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAA 35878 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2325 AACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAA 2266 Query 35879 TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAA 35938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2265 TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAA 2206 Query 35939 GTTGGAGTCATTACC 35953 ||||||||||||||| Sbjct 2205 GTTGGAGTCATTACC 2191 >seq1560 Length=7175 Score = 471 bits (522), Expect = 1e-128 Identities = 263/264 (99%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 35183 GCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGT 35242 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 266 GCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGT 207 Query 35243 GGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGG 35302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 206 GGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGG 147 Query 35303 CAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACT 35362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 146 CAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACT 87 Query 35363 GCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCAT 35422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 86 GCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCAT 27 Query 35423 GAATGGCGTTGGATGCCGGGCAAC 35446 |||||||||||||||||||||||| Sbjct 26 GAATGGCGTTGGATGCCGGGCAAC 3 >seq132 Length=122212 Score = 89.7 bits (98), Expect = 1e-13 Identities = 56/59 (95%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 4 GGACTGCCCGCCCCATCGtttttttATACCCGCGAAAAATGAAATTTAA-CCAGGAGTG 61 ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 119995 GGACTGCCCGCCCCATCGTTTTTTTATACCCGCGAAAAATGAAATTTAATCCGGGCGTG 119937 >seq1066 Length=13853 Score = 87.8 bits (96), Expect = 5e-13 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 37504 ATTACTGTGTTAAGAGTGGTTACTTCGCCACACAGCTTAAACCCGCCGTCGAGCGGGTTT 37563 |||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 1897 ATTAGTGTGTTAAGAGTGGTTACTTCGCCACACAACTTAAACCCGCCACTGAGCGGGTTT 1838 Query 37564 T 37564 | Sbjct 1837 T 1837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127097727099840