Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_022969.1
Length=76217
Score E
Sequences producing significant alignments: (Bits) Value
seq904 178 6e-40
>seq904
Length=17929
Score = 178 bits (196), Expect = 6e-40
Identities = 405/603 (67%), Gaps = 15/603 (2%)
Strand=Plus/Minus
Query 66169 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66228
|||| |||||| | || ||||||||||| || |||||||| || || | || |||
Sbjct 5108 CCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACG 5049
Query 66229 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66288
|| || | | | ||| |||||| | ||| | | || | ||||| |||||
Sbjct 5048 CTGCAGGTGATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAA 4989
Query 66289 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66348
||| | |||||||| ||||| || || || || |||||||||| || ||
Sbjct 4988 CACGCGCTGGACCCAATCTACGCACGTAAACTGGGCGTCGATATCGACAACCTGCTG-TG 4930
Query 66349 GTTC-AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGG 66407
| | |||||||||| ||||||||||| ||||| ||| |||| ||| | |||||
Sbjct 4929 CTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGGCGCGTTCTGG 4870
Query 66408 CGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGA 66467
|| | | | ||||||||||||| |||||||| ||| |||| || || ||||
Sbjct 4869 CGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGA 4810
Query 66468 AGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCG 66527
|||||| ||||| ||| |||| | ||||| || || | ||| ||||| |||||
Sbjct 4809 AGGCGAAATCGGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCG 4750
Query 66528 CAAGCTCACCGGCACCATCTCCAGCA--CCAACACGCTGACGCTCTGGGTCAACCAGTTG 66585
||||| | || | | || |||| ||||||||||| | ||| |||||||| |
Sbjct 4749 TAAGCTGGCGGGTA--ACCTGAAGCAGTCCAACACGCTGCTGATCTTCATCAACCAGATC 4692
Query 66586 CGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAATGAGACCACCACGGGCGGCAAG 66642
|| ||| || || ||| | ||| |||| || ||||| || || || ||
Sbjct 4691 CGTATGAAAATTGG---TGTGATGTTCGGTAACCCG---GAAACCACTACCGGTGGTAAC 4638
Query 66643 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 66702
|| ||| ||||||||||| || || | || ||||||| |||| | | | ||| ||
Sbjct 4637 GCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAG 4578
Query 66703 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 66762
||||| | | || || | | ||||| ||||| || || |||||||| | || ||
Sbjct 4577 GGCGAAAACGTGGTGGGTAGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCG 4518
Query 66763 CCG 66765
|||
Sbjct 4517 CCG 4515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 243757252765048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |