Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq223 96.9 5e-15
>seq223
Length=82600
Score = 96.9 bits (106), Expect = 5e-15
Identities = 111/148 (75%), Gaps = 1/148 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||||||| | ||||| | || ||||||||||| || | || || || | |
Sbjct 42490 TGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCAG 42431
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| |||| || |||| ||||||||| ||||||||||||||||| ||||| |
Sbjct 42430 ACACCATTGAAAACGTTAAAACAAAAATACAAGACAAAGAAGGCATTCCACCTGATCAGC 42371
Query 146152 AAAGACTCATTTTTGCAGGT-AAACAAT 146178
| || | |||||||| ||| || ||||
Sbjct 42370 AGCGATTAATTTTTGCTGGTGAATCAAT 42343
Score = 87.8 bits (96), Expect = 3e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | ||||| ||||| ||||||||||| || | || || || | |
Sbjct 42206 TGCAAATTTTTGTGAAAACTTTAACCGGAAAAACAATAACGCTGGAAGTGGAGCCGTCGG 42147
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| |||||| |||| || ||| ||||| || ||| ||||| |||||||| |||||||
Sbjct 42146 ACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGTATTCCACCTGATCAAC 42087
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
|| | | |||||||| ||||
Sbjct 42086 AACGTTTAATTTTTGCTGGTA 42066
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | ||||| | || |||||||| ||||| |||| || || | |
Sbjct 43915 TGCAGATTTTCGTGAAAACGCTCACGGGAAAAACCATTACGCTTGAAGTTGAGCCGTCTG 43856
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| | ||| ||||||| || |||||||| ||| ||| ||||||||||| || |||||||
Sbjct 43855 ACTCAATTGAAAATGTGAAGAATAAAATTCAAGATAAGGAAGGCATTCCTCCGGATCAAC 43796
Query 146152 AAAGACTCATTTTTGCAGGT 146171
| | || || || ||||||
Sbjct 43795 AGCGTCTAATCTTCGCAGGT 43776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786125558655520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |