Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq223 96.9 5e-15 >seq223 Length=82600 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/148 (75%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | ||||| | || ||||||||||| || | || || || | | Sbjct 42490 TGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCAG 42431 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || |||| ||||||||| ||||||||||||||||| ||||| | Sbjct 42430 ACACCATTGAAAACGTTAAAACAAAAATACAAGACAAAGAAGGCATTCCACCTGATCAGC 42371 Query 146152 AAAGACTCATTTTTGCAGGT-AAACAAT 146178 | || | |||||||| ||| || |||| Sbjct 42370 AGCGATTAATTTTTGCTGGTGAATCAAT 42343 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||| ||||||||||| || | || || || | | Sbjct 42206 TGCAAATTTTTGTGAAAACTTTAACCGGAAAAACAATAACGCTGGAAGTGGAGCCGTCGG 42147 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| |||| || ||| ||||| || ||| ||||| |||||||| ||||||| Sbjct 42146 ACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGTATTCCACCTGATCAAC 42087 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || | | |||||||| |||| Sbjct 42086 AACGTTTAATTTTTGCTGGTA 42066 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | || |||||||| ||||| |||| || || | | Sbjct 43915 TGCAGATTTTCGTGAAAACGCTCACGGGAAAAACCATTACGCTTGAAGTTGAGCCGTCTG 43856 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| ||||||| || |||||||| ||| ||| ||||||||||| || ||||||| Sbjct 43855 ACTCAATTGAAAATGTGAAGAATAAAATTCAAGATAAGGAAGGCATTCCTCCGGATCAAC 43796 Query 146152 AAAGACTCATTTTTGCAGGT 146171 | | || || || |||||| Sbjct 43795 AGCGTCTAATCTTCGCAGGT 43776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786125558655520