Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq223 116 3e-21 >seq223 Length=82600 Score = 116 bits (128), Expect = 3e-21 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| | || | || || ||||| ||||||||||| |||||||||||| ||||| || Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGT-ATTTTAGT 42692 Query 29707 -TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 || ||| |||| | ||| || ||| |||| ||||| || || || || |||||||||| Sbjct 42693 CTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAG 42752 Query 29766 GGTTTTAACAAATATCTGCAT 29786 ||||| || ||||||||||| Sbjct 42753 AGTTTTCACGAATATCTGCAT 42773 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| | || |||| |||||||| || ||||| || ||||||||||||| |||| | Sbjct 42352 CCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGTT 42411 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || || |||| | ||||| || | || ||||| || || || ||||| ||||| | Sbjct 42412 TTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAGC 42471 Query 29767 GTTTTAACAAATATCTGCAT 29786 |||||||| ||||| ||||| Sbjct 42472 GTTTTAACGAATATTTGCAT 42491 Score = 102 bits (112), Expect = 6e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| | |||| | |||||||| || ||||| || |||||||| |||| || Sbjct 41216 CCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGGCC 41275 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || || | || | |||||| ||| | || ||||| ||||||||||||||||| || || Sbjct 41276 TTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCAAT 41335 Query 29767 GTTTTAACAAATATCTGCATT 29787 ||||| |||||||| |||||| Sbjct 41336 GTTTTGACAAATATTTGCATT 41356 Score = 102 bits (112), Expect = 6e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 29642 GTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATT 29701 |||| || ||| | || |||| |||||||| || || ||||||||||||||||| | | Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552 Query 29702 TTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 | |||||| |||||| || || ||| | || ||||| | ||| ||||| || || | Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612 Query 29762 TTAAGGTTTTAACAAATATCTGCATT 29787 | | ||||| || |||||||||||| Sbjct 41613 TCAGCGTTTTCACGAATATCTGCATT 41638 Score = 100 bits (110), Expect = 2e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGT 29714 ||||| | |||||||||||| || || || || ||||| || |||||||| || || | Sbjct 43505 ATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTG-AATTTTTGCCTTTACGTT 43563 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 || || ||||| ||| |||| ||||| | ||||| |||||||| ||||| || || || Sbjct 43564 CTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAAAGTCTTGAC 43623 Query 29775 AAATATCTGCAT 29786 ||| |||||||| Sbjct 43624 AAAAATCTGCAT 43635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 ||||| || || |||||||| ||||||||||| ||| || || || ||| | || | || Sbjct 42937 TGCTGGTCAGGTGGAATACCTTCTTTGTCTTG-AATCTTAGTCTTAACATTCTCAATGGT 42995 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| || | |||||||||||||| ||||| ||||| || || || || || || || || Sbjct 42996 GTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGTCAATGTCTTGACGAAAATTTG 43055 Query 29784 CATT 29787 |||| Sbjct 43056 CATT 43059 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | || | || |||||||| || || || || || || ||||| |||||| Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTG-AATTTT 43255 Query 29704 TGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || || || | || | || || || | || ||||| || || ||||||||||| || Sbjct 43256 CGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGT 43315 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 || ||||| |||||||||||||| Sbjct 43316 TAGCGTTTTCACAAATATCTGCAT 43339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385199688165996