Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq223 116 3e-21
>seq223
Length=82600
Score = 116 bits (128), Expect = 3e-21
Identities = 112/141 (79%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | || | || || ||||| ||||||||||| |||||||||||| ||||| ||
Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGT-ATTTTAGT 42692
Query 29707 -TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765
|| ||| |||| | ||| || ||| |||| ||||| || || || || ||||||||||
Sbjct 42693 CTTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAG 42752
Query 29766 GGTTTTAACAAATATCTGCAT 29786
||||| || |||||||||||
Sbjct 42753 AGTTTTCACGAATATCTGCAT 42773
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | || |||| |||||||| || ||||| || ||||||||||||| |||| |
Sbjct 42352 CCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGTT 42411
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| || |||| | ||||| || | || ||||| || || || ||||| ||||| |
Sbjct 42412 TTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAGC 42471
Query 29767 GTTTTAACAAATATCTGCAT 29786
|||||||| ||||| |||||
Sbjct 42472 GTTTTAACGAATATTTGCAT 42491
Score = 102 bits (112), Expect = 6e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|| ||| | |||| | |||||||| || ||||| || |||||||| |||| ||
Sbjct 41216 CCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGGCC 41275
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| || | || | |||||| ||| | || ||||| ||||||||||||||||| || ||
Sbjct 41276 TTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCAAT 41335
Query 29767 GTTTTAACAAATATCTGCATT 29787
||||| |||||||| ||||||
Sbjct 41336 GTTTTGACAAATATTTGCATT 41356
Score = 102 bits (112), Expect = 6e-17
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 29642 GTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATT 29701
|||| || ||| | || |||| |||||||| || || ||||||||||||||||| | |
Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552
Query 29702 TTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761
| |||||| |||||| || || ||| | || ||||| | ||| ||||| || || |
Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612
Query 29762 TTAAGGTTTTAACAAATATCTGCATT 29787
| | ||||| || ||||||||||||
Sbjct 41613 TCAGCGTTTTCACGAATATCTGCATT 41638
Score = 100 bits (110), Expect = 2e-16
Identities = 103/132 (78%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGT 29714
||||| | |||||||||||| || || || || ||||| || |||||||| || || |
Sbjct 43505 ATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTG-AATTTTTGCCTTTACGTT 43563
Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774
|| || ||||| ||| |||| ||||| | ||||| |||||||| ||||| || || ||
Sbjct 43564 CTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAAAGTCTTGAC 43623
Query 29775 AAATATCTGCAT 29786
||| ||||||||
Sbjct 43624 AAAAATCTGCAT 43635
Score = 91.5 bits (100), Expect = 1e-13
Identities = 96/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723
||||| || || |||||||| ||||||||||| ||| || || || ||| | || | ||
Sbjct 42937 TGCTGGTCAGGTGGAATACCTTCTTTGTCTTG-AATCTTAGTCTTAACATTCTCAATGGT 42995
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
||| || | |||||||||||||| ||||| ||||| || || || || || || || ||
Sbjct 42996 GTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGTCAATGTCTTGACGAAAATTTG 43055
Query 29784 CATT 29787
||||
Sbjct 43056 CATT 43059
Score = 82.4 bits (90), Expect = 6e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| || ||| | || | || |||||||| || || || || || || ||||| ||||||
Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTG-AATTTT 43255
Query 29704 TGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
|| || || | || | || || || | || ||||| || || ||||||||||| ||
Sbjct 43256 CGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGT 43315
Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| ||||||||||||||
Sbjct 43316 TAGCGTTTTCACAAATATCTGCAT 43339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385199688165996
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |