Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_023561.1
Length=173276
Score E
Sequences producing significant alignments: (Bits) Value
seq1870 84.2 2e-11
seq2084 82.4 8e-11
>seq1870
Length=4832
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163
|| |||||| ||| ||| | ||||| |||||||| ||||||||| || ||||||||||
Sbjct 505 TGATGCCGGCTAAAGGACTTGAACCCTCGACCCTCTGATTACAAATCAGATGCTCTACCA 564
Query 72164 ACTGAGCTAAACCGGC 72179
|||||||||| |||||
Sbjct 565 ACTGAGCTAAGCCGGC 580
>seq2084
Length=3937
Score = 82.4 bits (90), Expect = 8e-11
Identities = 84/108 (78%), Gaps = 4/108 (4%)
Strand=Plus/Plus
Query 77373 TGGTGGGAATAACTGGACTCGAACCAGTGGCCTAACGATTATCGGTCGTTTGCTCTA-CC 77431
||||||| || ||||||||||||| | ||| ||||||||| ||||| ||||||| ||
Sbjct 2523 TGGTGGGCCAAAATGGACTCGAACCATCGACCTCACGATTATCAGTCGTGTGCTCTAGCC 2582
Query 77432 AACTGAGCTATATTCCCTGAATTTGGTGGGGAGTGATGGAGTCGAACC 77479
| ||||||||| ||| || |||||| || | | ||| |||||||
Sbjct 2583 AGCTGAGCTATTGGCCC---ATGTGGTGGAGATTAAGGGAATCGAACC 2627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 554326401247360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |