Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq1870 84.2 2e-11 seq2084 82.4 8e-11 >seq1870 Length=4832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 || |||||| ||| ||| | ||||| |||||||| ||||||||| || |||||||||| Sbjct 505 TGATGCCGGCTAAAGGACTTGAACCCTCGACCCTCTGATTACAAATCAGATGCTCTACCA 564 Query 72164 ACTGAGCTAAACCGGC 72179 |||||||||| ||||| Sbjct 565 ACTGAGCTAAGCCGGC 580 >seq2084 Length=3937 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/108 (78%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 77373 TGGTGGGAATAACTGGACTCGAACCAGTGGCCTAACGATTATCGGTCGTTTGCTCTA-CC 77431 ||||||| || ||||||||||||| | ||| ||||||||| ||||| ||||||| || Sbjct 2523 TGGTGGGCCAAAATGGACTCGAACCATCGACCTCACGATTATCAGTCGTGTGCTCTAGCC 2582 Query 77432 AACTGAGCTATATTCCCTGAATTTGGTGGGGAGTGATGGAGTCGAACC 77479 | ||||||||| ||| || |||||| || | | ||| ||||||| Sbjct 2583 AGCTGAGCTATTGGCCC---ATGTGGTGGAGATTAAGGGAATCGAACC 2627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554326401247360