Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq732 179 6e-40 >seq732 Length=24842 Score = 179 bits (198), Expect = 6e-40 Identities = 749/1162 (64%), Gaps = 45/1162 (4%) Strand=Plus/Plus Query 187375 CGATGCATTCCAGACGTTTGAATATCAAGTCAATACGATGCAGACTTCAAACGGTCAGAC 187434 |||||| |||||| || | || || |||| || || |||| || | ||||||||||| Sbjct 157 CGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGAC 216 Query 187435 ACCATTCACGACAATCAACTTCGGGTTAGGTACGTCGTGGGAAGAAAAACTTATTCAAAA 187494 || || || | || || | || || |||||| || ||||| | Sbjct 217 GCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGGGAATCGCGCCTGATTCAGGA 276 Query 187495 AAGTATTCTTCAGAATCGTATTGCAGGTCTAGGTAAGACTAAGAAAACTGCTATTTTCCC 187554 | ||| || | || ||||| ||||| || ||||| | |||||||| | ||||| Sbjct 277 ATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTTCCC 336 Query 187555 TAAGCTTGTTTTCACATTGAGAGACGGCGTGAACCTAAAAGAAGGCGACCCGTGCTACGC 187614 || || || || | | | || || |||||| ||| ||||||| ||| ||||| Sbjct 337 GAAACTGGTGTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGAACTACGA 396 Query 187615 CATCAAAAAGTTAGCTCTTGAATGTGCAAGTAAGCGTATGTACCCAGACATTTTGAACTA 187674 ||||||| || | || || || || ||||| ||||| ||||| || || || ||||||| Sbjct 397 CATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATCCTGAACTA 456 Query 187675 TGACAAACTAGTTGAAACGACTGGTGGGTTTAAGTCTCCAATGGGCTGTCGCTCATTCTT 187734 || | |||| || || ||| |||||| | || |||||||| ||| ||| | Sbjct 457 CGATCAGGTAGTGAAAGTCACCGGTTCGTTTAAAACCCCGATGGGCTGCCGCAGCTTCCT 516 Query 187735 GGGTGACTGGAAGAACGAAGATGGTGAAACGGTATTCGATGGTCGTAATAACTTAGGCGT 187794 || | ||| | || ||| | || || | | |||||||||||| ||| | ||||| Sbjct 517 CGGCGTGTGGGAAAATGAAAACGGCGAGCAGATCCACGATGGTCGTAACAACCTCGGCGT 576 Query 187795 CGTCTCAATCAATATCCCGCGTATTGCTATTGAAGCATCGGGTGATACTGAACGCTTCTT 187854 || | || | |||||||||||| | |||||| || ||| | ||||| Sbjct 577 GATCAGCCTGAACCTGCCGCGTATTGCTCTGGAAGCAAAAGGCGATGAAGCCACCTTCTG 636 Query 187855 CGAGATCTTACACGAGCGTTGTACACTAGCTTACG--AAGCATTGATGTTGCGTATTAAG 187912 || | | | || ||| || || ||| | || ||||| ||||| Sbjct 637 GAAGCTGCTGGATGAACGTCTGGTGCTGGC--ACGTAAGGCGCTGATGACCCGTATCGCT 694 Query 187913 CGTTTTGATGATGTAACTGCATCAGTTGCTCCGAT--TCTATACTGTGAAGGTGCAATGG 187970 ||| | || | || | || || || ||||| |||||| || |||||||| | Sbjct 695 CGTCTCGAAGGCGTGAAAGCGCGCGTGGCCCCGATCCTCTATA-TG-GAAGGTGCTTGTG 752 Query 187971 GCGTGCG-CTTGAAGCCAACTGATAAAGTCAGTGAAGTTTTCAAACACGGTCGTTCAAGT 188029 ||||||| || | || || ||| | || |||| | |||||| |||||||| | | Sbjct 753 GCGTGCGTCTCAATGCTGAC-GATGATGTTTCTGAAATCTTCAAAAACGGTCGTGCGTCT 811 Query 188030 ATCTCGCTTGGTTATATCGGGTTACACG-AAGCAGTAACGTTGCT-TTCGCCAGATAAAG 188087 || ||||| ||||| ||||| | |||| || || ||||| ||| |||| | | Sbjct 812 ATTTCGCTGGGTTACATCGGCATCCACGAAACCATTAACG-CGCTGTTCGGC-------G 863 Query 188088 ACATGCATACGTTTGAGTCACAGCACAAACAATTCCTCGCTGAAAAG-------ATTGTG 188140 | |||| |||| | || || | || | | ||| |||| | ||||| Sbjct 864 GCGAGCAT--GTTTACGACA----ACGAGCAGCTTCGCGC-GAAAGGTATCGCCATTGTT 916 Query 188141 GAAACTCTTAGAGCGT-ACACA---GATGCATGGAAAGAACTGACGGGCTACGGTTTCAG 188196 ||| ||| |||| | || ||| ||||||||| ||||| || |||||||| Sbjct 917 GAACGTCT----GCGTCAGGCAGTGGATAAGTGGAAAGAAGAAACGGGTTATGGTTTCAG 972 Query 188197 TCTGTACAGTACACCAAGTGAATCGCTGTGTGATCGTTTCTGTCGTCTCGACCAAGAGAA 188256 ||| ||||| || || |||||| ||||| || || ||||| |||||||| | | Sbjct 973 TCTCTACAGCACGCCGAGTGAAAACCTGTGCGACCGCTTCTGCCGTCTCGATACTGCTGA 1032 Query 188257 ATACGGTGTCATTACAGGTATCAATGACAAAGACTATTACACAAACTCGTTTCACTTAGA 188316 | || || | | || | | || |||| || ||||| ||| || ||| | || Sbjct 1033 GTTTGGCGTGGTGCCGGGCGTGACCGATAAAGGTTACTACACCAACAGTTTCCACCTCGA 1092 Query 188317 CGTGTTCAAGAAAGTTAACCCATTTGAGAAAATTGATTTTGAAGCTGCATACCCAATTCA 188376 ||| ||||| || ||||| | || || || || |||||||| | ||||| | Sbjct 1093 TGTGGAGAAGAAGGTGAACCCGTACGACAAGATCGACTTTGAAGCGCCTTACCCGCCGCT 1152 Query 188377 TGCAAACGGTGGTTTCATCTGTTATGCTGAGTTCCCGAATATGCGAGATAACATCAAAGG 188436 || |||||||||||||| || || | |||| || || || | | ||| | || | Sbjct 1153 GGCGAACGGTGGTTTCATTTGCTACGGCGAGTATCCAAACATTCAGCACAACCTGAAGGC 1212 Query 188437 TCTAGAGCGCGTATGGGATTA-TGCTTACACTAAAGTAGCTTACTTCGGTACGAATACCC 188495 || || || |||||||| ||| || | ||| | || | ||| || ||||| | Sbjct 1213 GCTGGAAGATGTCTGGGATTACAGCTATCA-GCATGTACCGTATTACGGCACCAATACAC 1271 Query 188496 CGATTGATCAGTG-TACGTGTG 188516 |||||||| |||| |||| ||| Sbjct 1272 CGATTGATGAGTGCTACGAGTG 1293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790115751354240