Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_023574.1
Length=128546
Score E
Sequences producing significant alignments: (Bits) Value
seq413 113 4e-20
>seq413
Length=48931
Score = 113 bits (124), Expect = 4e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 60030 TTTATCTACCACAGGAAAATGAAGCAATTAATGATAAGTCAGGATATGCAAACTCTGTAA 60089
||||| |||||||||||||||||| ||||||||||| |||| ||||| || | |
Sbjct 7723 TTTATTTACCACAGGAAAATGAAGGGATTAATGATAAATCAGCGTATGCTGACAGTAAGA 7782
Query 60090 TGATTGCAGAAGCTGATACAAATGAACTGTTGAGTTCTGACTTTATTGTAGCTGTCCTAG 60149
|||| || || ||||| | || | |||| ||| || || || || | |||
Sbjct 7783 TGATCGCTCTTGCCGATACCGAAGAGGTTTTGAAAAGTGATTTGATGGTGGCGTTGTTAG 7842
Query 60150 ACGGTGCAACAATTGATGTTGGTGTGGCTAGTGAAATTGGAGTTGCCTATGCTAAAGGCA 60209
| || || ||||||| || || ||| ||||| || || || || || |||||||
Sbjct 7843 ATGGATTGACCATTGATGCAGGCGTAGCTTCCGAAATCGGTGTCGCTTACGCGAAAGGCA 7902
Query 60210 TTCCAGTTATTGGTCTGTATTCAGATTCACGTCAA 60244
|||| |||||||| ||||| ||||||| ||||||
Sbjct 7903 TTCCTGTTATTGGATTGTATACAGATTCTCGTCAA 7937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 411201571071412
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |