Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_023612.1 Length=39078 Score E Sequences producing significant alignments: (Bits) Value seq729 82.4 2e-11 >seq729 Length=25020 Score = 82.4 bits (90), Expect = 2e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 29035 ATGAATAAAGTCATTTTAGTTGGACGTTTAACAAAAGACCCGGAATTACGTTACACACAA 29094 || ||||| || | ||||||| ||||||||||| || || || ||||| ||||| | Sbjct 1322 ATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCGCA 1263 Query 29095 AGCGGGGTGGCGGTTGCGACCTTTACATTGGCGGTCAACCGCCGCTTTACAAACCAACAA 29154 | || | ||||| || ||||| || || || || || ||||| || ||| Sbjct 1262 AATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAAGC 1203 Query 29155 GGCGAGCGCGAGGCTGATTTTATCAATTGCCAAGTATGGCGTAAAGCGGCCGAAA 29209 || | |||||||| |||||||||||||| | | ||||| ||| | || |||| Sbjct 1202 GGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAA 1148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124921834490880