Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq195 255 4e-62 seq194 87.8 1e-11 >seq195 Length=92702 Score = 255 bits (282), Expect = 4e-62 Identities = 879/1357 (65%), Gaps = 28/1357 (2%) Strand=Plus/Plus Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || ||||| || | | ||||| || ||| | | ||||| ||| | | ||||| Sbjct 10649 TTGTCTTTGGTCATTGCGCGTTCGCCTTCGTACACCTGGATCAGCACTCCGGGCTGATTG 10708 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || |||||||| || || ||| ||| || ||||| || ||||||| | || Sbjct 10709 TCGGAATAAGTAGTGAACACTTGGGACACCTTCGTTGGAATCGTAGTGTTTCGCTTTATC 10768 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | | |||||||| |||||| || ||||| | ||| | ||| | || || || || | Sbjct 10769 AAAGCGGTCATAACACCACCGGCGGTTTCGATACCCAAAGATAAGGGCGTAACGTCCAAA 10828 Query 281717 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 281776 || | || || ||| | || | | | || |||||||| || || | ||| Sbjct 10829 AGCAAAAGATCTTGCACCGCCTCGTGCTTGTCGCCTGACAGAATAGCCGCCTGTACCGCA 10888 Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 || || || || || || || || ||||| | | | || || | || |||||||| Sbjct 10889 GCCCCGTAAGCTACGGCCTCGTCCGGATTGATGCTCTTGTTCAGCTCCTTTCCATTGAAG 10948 Query 281837 AAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | ||| | || || | || || |||||||| | || || ||||| || |||| Sbjct 10949 AAGTCTTGCAGCAACTTTTGA-ACTTTCGGAATACGGGTCGAACCACCAACCAACACAAC 11007 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATC-CAATAAAACTTTTTCAACGGGTTC-- 281952 || |||||||| || || |||| || | ||| | | | |||||| |||| || || Sbjct 11008 ATCGTGCACCTGAGACTTGTCCAACTTGGCATCGCGAAGAGACTTTT-CAACTGGATCCA 11066 Query 281953 AAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGAC 282012 ||| | ||| ||||| || | ||||| |||||||| || | ||| | || Sbjct 11067 AAGTCGAGCGG--AACAAATCGGCGCAAAGCTCTTCGAAACGGGCACGAGTGATCGTCGT 11124 Query 282013 ATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 282072 | ||| || || || ||| |||| ||||| ||| || | | ||| ||||| | Sbjct 11125 GTAATAGTCGATGCCCTCGTACAAGCTATCAATTTCTATGCTCGCTTGGGTCGA----GC 11180 Query 282073 TAGTGCACGTT----TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTG 282128 || | ||||| | || ||||| || ||||| | || | |||||||| | | Sbjct 11181 TACTTAACGTTCTCTTGGCTCGTTCGCAAGCTGTACGTAAACGACGTAAGGCACGAG--G 11238 Query 282129 ATT----GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA 282184 ||| || || ||| | || | ||| | |||||| || | || | || || Sbjct 11239 ATTTCCCGA--CATGTCTTTCTTGTTTTTGCGCTTGAACTCAGCCACGAAATGGGTCACC 11296 Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244 | ||||| || || |||||||| || | | ||||| |||| ||||| |||||| Sbjct 11297 ATGCGATTGTCGAAGTCTTCACCGCCAAGATGAGTATCGCCTGCCGTAGACTTTACTTCA 11356 Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAA 282304 || | ||||| |||| | ||||| | ||||| ||| || || |||| ||| ||| Sbjct 11357 AATATACCATCCTCAATTGTCAAAATGGACACATCGAAGGTACCGCCGCCCAGATCGAAA 11416 Query 282305 ATAAGTACATTCATTTCTTT-GT-CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 282362 || || ||||| |||| || | | || || ||||| || || || | ||||||| Sbjct 11417 ATGAGCACATTTCGTTCTCCAGTACCT--TTCTTGTCAAGGCCGTAAGCGATTGCAGCAG 11474 Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422 |||||||||| || ||||||| | ||||| | |||| ||| | || || ||||| | Sbjct 11475 CAGTTGGTTCGTTGATAATTCGAAGGACATTCAATCCAGAAATGGTACCGGCGTCTTTCG 11534 Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTT 282482 | || || || || ||||| || || ||||| |||||||| || |||||||| | || Sbjct 11535 TTGCCTGCCTCTGAGAATCATTGAAGTATGCCGGAACAGTGATGACGGCATCCTTCACGG 11594 Query 282483 CTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 282542 ||| || | |||||| || || | |||||||| | | ||| | | || Sbjct 11595 TTTTGCCCAAATAAGCTTCCGCCGTCTCCTTCATTTTCACAAGCACCATAGCGCTGACTT 11654 Query 282543 GTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTAC 282602 ||| |||| | | ||| | || || ||| || | || | ||| || | Sbjct 11655 CTTCGGGAGTAAACATCTTCGTCTCGCCTTTGTATTCCACCTGAATCTTTGGCTTGCCTC 11714 Query 282603 CAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAA 282662 || || | || || || || ||||||| ||||| || || || ||| ||||| Sbjct 11715 CATCACTTATCACCTTGAAAGGCCAATGCTTCATGTCAGACTGCACAGCGGAGTCATCGT 11774 Query 282663 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTT 282722 | || || || | ||| || || || |||| || ||| ||||| | || | | Sbjct 11775 ATCGTCGCCCGATCAGTCGCTTCGCGTCGAAAACGGTGTTGTGGGGATTTAAAGCCACCT 11834 Query 282723 GATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAG 282782 ||| ||||| ||||| || ||||| || || || ||||| | |||||| || | Sbjct 11835 GATTCTTGGCGGCATCGCCGATCAGCCTCTCCGTGTCCGTAAAAGCAACATAGCTCGGCG 11894 Query 282783 TTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTA 282842 | || || || || || || || || || || || || || |||| || |||| || | Sbjct 11895 TAGTTCGGTTGCCCTGGTCGTTGGCTATTATCTCCACCTTTCCATGCTGAAATACGCCAA 11954 Query 282843 CACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 | ||||| | || || || |||||||| |||| ||| Sbjct 11955 CGCAACTGTACGTAGTACCCAAATCAATTCCAACAGC 11991 >seq194 Length=92744 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 432287 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACG 432346 ||| ||||||||||| ||| |||| || | |||||||| | || ||| | || ||| | Sbjct 6900 AGGCAAAGAAGGTCGCATTCGAGGTAACCTTATGGGAAAAAGGGTTGATTTCTCAGCAAG 6841 Query 432347 TACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTAT 432406 || || || || | ||||| ||| ||||||| | || | ||||||||| | || Sbjct 6840 GACTGTGATCACGCCCGATCCCAATCTTGCTCTTGACCAATTGGGTGTTCCTAAAACCAT 6781 Query 432407 TGCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439 ||| ||||||||||| | ||||||||| || Sbjct 6780 TGCCCAAAATCTTACTGTACCCGAAATTGTTAC 6748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740426357963256