Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq195 255 4e-62
seq194 87.8 1e-11
>seq195
Length=92702
Score = 255 bits (282), Expect = 4e-62
Identities = 879/1357 (65%), Gaps = 28/1357 (2%)
Strand=Plus/Plus
Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596
|| ||||| || | | ||||| || ||| | | ||||| ||| | | |||||
Sbjct 10649 TTGTCTTTGGTCATTGCGCGTTCGCCTTCGTACACCTGGATCAGCACTCCGGGCTGATTG 10708
Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656
|| |||||||| || || ||| ||| || ||||| || ||||||| | ||
Sbjct 10709 TCGGAATAAGTAGTGAACACTTGGGACACCTTCGTTGGAATCGTAGTGTTTCGCTTTATC 10768
Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716
| | |||||||| |||||| || ||||| | ||| | ||| | || || || || |
Sbjct 10769 AAAGCGGTCATAACACCACCGGCGGTTTCGATACCCAAAGATAAGGGCGTAACGTCCAAA 10828
Query 281717 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 281776
|| | || || ||| | || | | | || |||||||| || || | |||
Sbjct 10829 AGCAAAAGATCTTGCACCGCCTCGTGCTTGTCGCCTGACAGAATAGCCGCCTGTACCGCA 10888
Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836
|| || || || || || || || ||||| | | | || || | || ||||||||
Sbjct 10889 GCCCCGTAAGCTACGGCCTCGTCCGGATTGATGCTCTTGTTCAGCTCCTTTCCATTGAAG 10948
Query 281837 AAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895
|| | ||| | || || | || || |||||||| | || || ||||| || ||||
Sbjct 10949 AAGTCTTGCAGCAACTTTTGA-ACTTTCGGAATACGGGTCGAACCACCAACCAACACAAC 11007
Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATC-CAATAAAACTTTTTCAACGGGTTC-- 281952
|| |||||||| || || |||| || | ||| | | | |||||| |||| || ||
Sbjct 11008 ATCGTGCACCTGAGACTTGTCCAACTTGGCATCGCGAAGAGACTTTT-CAACTGGATCCA 11066
Query 281953 AAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGAC 282012
||| | ||| ||||| || | ||||| |||||||| || | ||| | ||
Sbjct 11067 AAGTCGAGCGG--AACAAATCGGCGCAAAGCTCTTCGAAACGGGCACGAGTGATCGTCGT 11124
Query 282013 ATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 282072
| ||| || || || ||| |||| ||||| ||| || | | ||| ||||| |
Sbjct 11125 GTAATAGTCGATGCCCTCGTACAAGCTATCAATTTCTATGCTCGCTTGGGTCGA----GC 11180
Query 282073 TAGTGCACGTT----TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTG 282128
|| | ||||| | || ||||| || ||||| | || | |||||||| | |
Sbjct 11181 TACTTAACGTTCTCTTGGCTCGTTCGCAAGCTGTACGTAAACGACGTAAGGCACGAG--G 11238
Query 282129 ATT----GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA 282184
||| || || ||| | || | ||| | |||||| || | || | || ||
Sbjct 11239 ATTTCCCGA--CATGTCTTTCTTGTTTTTGCGCTTGAACTCAGCCACGAAATGGGTCACC 11296
Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244
| ||||| || || |||||||| || | | ||||| |||| ||||| ||||||
Sbjct 11297 ATGCGATTGTCGAAGTCTTCACCGCCAAGATGAGTATCGCCTGCCGTAGACTTTACTTCA 11356
Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAA 282304
|| | ||||| |||| | ||||| | ||||| ||| || || |||| ||| |||
Sbjct 11357 AATATACCATCCTCAATTGTCAAAATGGACACATCGAAGGTACCGCCGCCCAGATCGAAA 11416
Query 282305 ATAAGTACATTCATTTCTTT-GT-CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 282362
|| || ||||| |||| || | | || || ||||| || || || | |||||||
Sbjct 11417 ATGAGCACATTTCGTTCTCCAGTACCT--TTCTTGTCAAGGCCGTAAGCGATTGCAGCAG 11474
Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422
|||||||||| || ||||||| | ||||| | |||| ||| | || || ||||| |
Sbjct 11475 CAGTTGGTTCGTTGATAATTCGAAGGACATTCAATCCAGAAATGGTACCGGCGTCTTTCG 11534
Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTT 282482
| || || || || ||||| || || ||||| |||||||| || |||||||| | ||
Sbjct 11535 TTGCCTGCCTCTGAGAATCATTGAAGTATGCCGGAACAGTGATGACGGCATCCTTCACGG 11594
Query 282483 CTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 282542
||| || | |||||| || || | |||||||| | | ||| | | ||
Sbjct 11595 TTTTGCCCAAATAAGCTTCCGCCGTCTCCTTCATTTTCACAAGCACCATAGCGCTGACTT 11654
Query 282543 GTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTAC 282602
||| |||| | | ||| | || || ||| || | || | ||| || |
Sbjct 11655 CTTCGGGAGTAAACATCTTCGTCTCGCCTTTGTATTCCACCTGAATCTTTGGCTTGCCTC 11714
Query 282603 CAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAA 282662
|| || | || || || || ||||||| ||||| || || || ||| |||||
Sbjct 11715 CATCACTTATCACCTTGAAAGGCCAATGCTTCATGTCAGACTGCACAGCGGAGTCATCGT 11774
Query 282663 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTT 282722
| || || || | ||| || || || |||| || ||| ||||| | || | |
Sbjct 11775 ATCGTCGCCCGATCAGTCGCTTCGCGTCGAAAACGGTGTTGTGGGGATTTAAAGCCACCT 11834
Query 282723 GATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAG 282782
||| ||||| ||||| || ||||| || || || ||||| | |||||| || |
Sbjct 11835 GATTCTTGGCGGCATCGCCGATCAGCCTCTCCGTGTCCGTAAAAGCAACATAGCTCGGCG 11894
Query 282783 TTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTA 282842
| || || || || || || || || || || || || || |||| || |||| || |
Sbjct 11895 TAGTTCGGTTGCCCTGGTCGTTGGCTATTATCTCCACCTTTCCATGCTGAAATACGCCAA 11954
Query 282843 CACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879
| ||||| | || || || |||||||| |||| |||
Sbjct 11955 CGCAACTGTACGTAGTACCCAAATCAATTCCAACAGC 11991
>seq194
Length=92744
Score = 87.8 bits (96), Expect = 1e-11
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 432287 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACG 432346
||| ||||||||||| ||| |||| || | |||||||| | || ||| | || ||| |
Sbjct 6900 AGGCAAAGAAGGTCGCATTCGAGGTAACCTTATGGGAAAAAGGGTTGATTTCTCAGCAAG 6841
Query 432347 TACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTAT 432406
|| || || || | ||||| ||| ||||||| | || | ||||||||| | ||
Sbjct 6840 GACTGTGATCACGCCCGATCCCAATCTTGCTCTTGACCAATTGGGTGTTCCTAAAACCAT 6781
Query 432407 TGCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439
||| ||||||||||| | ||||||||| ||
Sbjct 6780 TGCCCAAAATCTTACTGTACCCGAAATTGTTAC 6748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740426357963256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |