Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq223 96.9 3e-15
>seq223
Length=82600
Score = 96.9 bits (106), Expect = 3e-15
Identities = 110/145 (76%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327
|||||| || |||| ||||| ||||| || || || || ||||||||||| | | | |
Sbjct 42915 TTTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTC-TTGAATCT 42973
Query 137328 TTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGG 137386
| || ||| | | || | ||||||| || |||||||||| ||| | |||||||| |
Sbjct 42974 TAGTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCG 43033
Query 137387 TCAATGTTTTTACGAATATTTGCAT 137411
||||||| || ||||| ||||||||
Sbjct 43034 TCAATGTCTTGACGAAAATTTGCAT 43058
Score = 87.8 bits (96), Expect = 2e-12
Identities = 109/146 (75%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC-GGTAATTT 137326
|| ||||||| | || | || |||||||| || || |||||||||||||| ||| ||
Sbjct 42348 TTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTA--TT 42405
Query 137327 TTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 137385
||||||||| | | ||| | ||||||| || || ||||| | || | || || ||
Sbjct 42406 TTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCA 42465
Query 137386 GTCAATGTTTTTACGAATATTTGCAT 137411
|| | ||||| ||||||||||||||
Sbjct 42466 GTAAGCGTTTTAACGAATATTTGCAT 42491
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329
|||| ||| | |||||||| |||||||| ||||| || ||||||||||| || ||
Sbjct 41214 TACCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGG 41273
Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389
|| | | || | ||||| | || || ||||| | ||| | || ||||| ||||
Sbjct 41274 CCTTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCA 41333
Query 137390 ATGTTTTTACGAATATTTGCAT 137411
||||||| || |||||||||||
Sbjct 41334 ATGTTTTGACAAATATTTGCAT 41355
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 137271 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTG 137330
||| || |||||| ||||||||||| || || |||||||| ||||| |||||||
Sbjct 43495 ACCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGC 43554
Query 137331 TTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAA 137390
|||| | || |||||||| | ||||| ||||| | || | || |||||||| ||
Sbjct 43555 CTTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAA 43614
Query 137391 TGTTTTTACGAATATTTGCAT 137411
|| || || || || |||||
Sbjct 43615 AGTCTTGACAAAAATCTGCAT 43635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488518620139200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |