Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq223 96.9 3e-15 >seq223 Length=82600 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327 |||||| || |||| ||||| ||||| || || || || ||||||||||| | | | | Sbjct 42915 TTTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTC-TTGAATCT 42973 Query 137328 TTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGG 137386 | || ||| | | || | ||||||| || |||||||||| ||| | |||||||| | Sbjct 42974 TAGTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCG 43033 Query 137387 TCAATGTTTTTACGAATATTTGCAT 137411 ||||||| || ||||| |||||||| Sbjct 43034 TCAATGTCTTGACGAAAATTTGCAT 43058 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC-GGTAATTT 137326 || ||||||| | || | || |||||||| || || |||||||||||||| ||| || Sbjct 42348 TTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTA--TT 42405 Query 137327 TTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 137385 ||||||||| | | ||| | ||||||| || || ||||| | || | || || || Sbjct 42406 TTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCA 42465 Query 137386 GTCAATGTTTTTACGAATATTTGCAT 137411 || | ||||| |||||||||||||| Sbjct 42466 GTAAGCGTTTTAACGAATATTTGCAT 42491 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329 |||| ||| | |||||||| |||||||| ||||| || ||||||||||| || || Sbjct 41214 TACCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGG 41273 Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389 || | | || | ||||| | || || ||||| | ||| | || ||||| |||| Sbjct 41274 CCTTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCA 41333 Query 137390 ATGTTTTTACGAATATTTGCAT 137411 ||||||| || ||||||||||| Sbjct 41334 ATGTTTTGACAAATATTTGCAT 41355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 137271 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTG 137330 ||| || |||||| ||||||||||| || || |||||||| ||||| ||||||| Sbjct 43495 ACCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGC 43554 Query 137331 TTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAA 137390 |||| | || |||||||| | ||||| ||||| | || | || |||||||| || Sbjct 43555 CTTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAA 43614 Query 137391 TGTTTTTACGAATATTTGCAT 137411 || || || || || ||||| Sbjct 43615 AGTCTTGACAAAAATCTGCAT 43635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488518620139200