Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_023688.1
Length=222006
Score E
Sequences producing significant alignments: (Bits) Value
seq732 253 3e-62
>seq732
Length=24842
Score = 253 bits (280), Expect = 3e-62
Identities = 471/676 (70%), Gaps = 14/676 (2%)
Strand=Plus/Minus
Query 27885 TTCATGCATACCGATGTAACCGATACTAACAGATGCGCGACCGTTGTCAAATGCTTTCAT 27944
||| || || ||||||||||| | || ||| || |||||||| | || | |||||
Sbjct 841 TTCGTGGATGCCGATGTAACCCAGCGAAATAGACGCACGACCGTTTTTGAA-GATTTCAG 783
Query 27945 GAT-ATCGTCATCTGGGTTCAGACGAACACCACAAGCACCTTCAACGTAAAGAATCGGAG 28003
| ||| || || | || ||||| || |||||||||||||| | || || ||||| |
Sbjct 782 AAACATCATCGTCAGCATTGAGACGCACGCCACAAGCACCTTCCATATAGAGGATCGGGG 723
Query 28004 CGACGCTGGCTTTAACGCCACGCAGACGATCAACGCGAGCCATCAAAGC-TTGCTTGGTG 28062
| |||| ||||| ||||| |||||| | | || | ||||| || || | ||
Sbjct 722 CCACGCGCGCTTTCACGCCTTCGAGACGAGCGATACGGGTCATCAGCGCCTTACGTGCC- 664
Query 28063 ATTTCCATACGTTCTTCCAGAAGATCCCAGAAAC--GCATAGGATTGCCATTTGAATCAA 28120
| ||| |||||| ||||| || | |||||| || | || ||| |||| || |
Sbjct 663 AGCACCAGACGTTCATCCAGCAGCTTCCAGAAGGTGGCTTC--ATCGCCTTTTGCTTCCA 606
Query 28121 GAGCGATTCGCGGCAAGTTCAGAGTGACCACACCCAAGTTGTTACGGCCTTCATGAACTT 28180
|||| || ||||||| |||||| ||| ||| || | ||||||||| || || || | |
Sbjct 605 GAGCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATCT 546
Query 28181 CAACACCGTTTTCGTCTTCCCAG-CGATGCAAGAAACTACGGCATCCCATTGGGAATTTG 28239
| |||||||| | |||||| || | | ||| || ||||| ||||| ||| |||
Sbjct 545 GCTCGCCGTTTTCATTTTCCCACACGCCG-AGGAAGCTGCGGCAGCCCATCGGGGTTTTA 487
Query 28240 AAACTACCAGTCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTC 28299
|| ||| || |||| || | || ||| ||| |||| || ||||||||||| || ||
Sbjct 486 AACGAACCGGTGACTTTCACTACCTGATCGTAGTTCAGGATATCCGGATACATGCGCTTG 427
Query 28300 GCAGCGCATTCCAGAGCCAACTGTTTGATACGATACAGCGGATCAGTCGGGTTCA-AGTT 28358
||||| ||||| |||| ||||||||| || |||||| | | || | |||
Sbjct 426 CTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATC-GCCTTTTTTATGGTT 368
Query 28359 GTGTCCGTCTTTCAGAGCGAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACC 28418
| || || | || || |||||||||||||| || | || ||| | ||||||
Sbjct 367 CAGACCATCGCGAATCGCAAACACCAGTTTCGGGAACACCGCAGTTTTACGGTTTTTACC 308
Query 28419 AAGACCAGCCAAACGAACTTTCAGGATTGCTTCTTGAATCAGTTCTGACTCCCAGCTAGT 28478
|| || || | ||| |||||| | ||| |||||||| || |||||||| ||
Sbjct 307 GAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGATTCCCAGCTGGT 248
Query 28479 ACCAAGACCAAAGCCGAAGG-TACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGT 28537
|| |||||||| || |||| |||| ||||| || ||||| || |||| |||||| ||||
Sbjct 247 GCCCAGACCAAAACCAAAGGTTACA-AACGGCGTCTGACCGTTGGCGGTGTGCAGGGTGT 189
Query 28538 TGACCTCATACTCCAG 28553
| || || ||||||||
Sbjct 188 TTACTTCGTACTCCAG 173
Score = 141 bits (156), Expect = 1e-28
Identities = 282/415 (68%), Gaps = 2/415 (0%)
Strand=Plus/Minus
Query 27252 CAAATGTTTAACACGTTTTTGCACTTCGTCCTGCTTGCCGGCATTAAATGCGCGAGAACC 27311
|||||||||||| || | ||||| |||||||| ||||| ||||||| || | | |
Sbjct 1471 CAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCGGCGTTAAATGGACGTGCATC 1412
Query 27312 GGGGTTCCCCAAATAACCGCAGACGCGACGAATAACGTTCATTTTGGTATCATCATGATT 27371
||| | || ||||| ||||| ||||| ||| | || || || | ||||| ||
Sbjct 1411 CGGGCTACCTAAATATCCGCACACGCGGCGAGTCACCGACACACGGGAGGCGTCATGGTT 1352
Query 27372 GCCGCACTTAGGACATTCATATCCTTTAGATGTAGCAGT-GAATTCGCCGTGATAACCGC 27430
|| || || || || | ||||| | || ||| | ||| || ||| | | || |
Sbjct 1351 ACCACATTTCGGGCAAGTGAAGCCTTT-GCTGGTGCACTCGAACTCACCGGTAAAGCCAC 1293
Query 27431 ATTCAAAACAAACATCAACTGGGGTATTGGTCCCATAATACGGGGTATTCCTATAAGCAT 27490
| || | || |||||| || |||||||| || |||||||| || | ||| |
Sbjct 1292 ACTCGTAGCACTCATCAATCGGTGTATTGGTGCCGTAATACGGTACATGCTGATAGCTGT 1233
Query 27491 AATCCCAAACATCTTCGAGAGCTTTCAGATTATCTTTCATATTCGGATATTCACCGTATG 27550
||||||| |||||||| || || ||||| || | | || || ||||| || |||||
Sbjct 1232 AATCCCAGACATCTTCCAGCGCCTTCAGGTTGTGCTGAATGTTTGGATACTCGCCGTAGC 1173
Query 27551 AAATAAAACCACCAGAACTAAGCGGAATGAATTGCTTTTCAAAATCGATCTTGTCATACG 27610
|||| |||||||| ||||| | | || |||||| ||||||||||| ||||
Sbjct 1172 AAATGAAACCACCGTTCGCCAGCGGCGGGTAAGGCGCTTCAAAGTCGATCTTGTCGTACG 1113
Query 27611 GATTTGTATTATGACGAACGTCCAGATGGAAACTGTTGGTATAATAATCCTTATC 27665
| || || | || || || |||||||||||||| || ||| | |||||
Sbjct 1112 GGTTCACCTTCTTCTCCACATCGAGGTGGAAACTGTTGGTGTAGTAACCTTTATC 1058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 710254300372160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |