Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq732 253 3e-62 >seq732 Length=24842 Score = 253 bits (280), Expect = 3e-62 Identities = 471/676 (70%), Gaps = 14/676 (2%) Strand=Plus/Minus Query 27885 TTCATGCATACCGATGTAACCGATACTAACAGATGCGCGACCGTTGTCAAATGCTTTCAT 27944 ||| || || ||||||||||| | || ||| || |||||||| | || | ||||| Sbjct 841 TTCGTGGATGCCGATGTAACCCAGCGAAATAGACGCACGACCGTTTTTGAA-GATTTCAG 783 Query 27945 GAT-ATCGTCATCTGGGTTCAGACGAACACCACAAGCACCTTCAACGTAAAGAATCGGAG 28003 | ||| || || | || ||||| || |||||||||||||| | || || ||||| | Sbjct 782 AAACATCATCGTCAGCATTGAGACGCACGCCACAAGCACCTTCCATATAGAGGATCGGGG 723 Query 28004 CGACGCTGGCTTTAACGCCACGCAGACGATCAACGCGAGCCATCAAAGC-TTGCTTGGTG 28062 | |||| ||||| ||||| |||||| | | || | ||||| || || | || Sbjct 722 CCACGCGCGCTTTCACGCCTTCGAGACGAGCGATACGGGTCATCAGCGCCTTACGTGCC- 664 Query 28063 ATTTCCATACGTTCTTCCAGAAGATCCCAGAAAC--GCATAGGATTGCCATTTGAATCAA 28120 | ||| |||||| ||||| || | |||||| || | || ||| |||| || | Sbjct 663 AGCACCAGACGTTCATCCAGCAGCTTCCAGAAGGTGGCTTC--ATCGCCTTTTGCTTCCA 606 Query 28121 GAGCGATTCGCGGCAAGTTCAGAGTGACCACACCCAAGTTGTTACGGCCTTCATGAACTT 28180 |||| || ||||||| |||||| ||| ||| || | ||||||||| || || || | | Sbjct 605 GAGCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATCT 546 Query 28181 CAACACCGTTTTCGTCTTCCCAG-CGATGCAAGAAACTACGGCATCCCATTGGGAATTTG 28239 | |||||||| | |||||| || | | ||| || ||||| ||||| ||| ||| Sbjct 545 GCTCGCCGTTTTCATTTTCCCACACGCCG-AGGAAGCTGCGGCAGCCCATCGGGGTTTTA 487 Query 28240 AAACTACCAGTCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTC 28299 || ||| || |||| || | || ||| ||| |||| || ||||||||||| || || Sbjct 486 AACGAACCGGTGACTTTCACTACCTGATCGTAGTTCAGGATATCCGGATACATGCGCTTG 427 Query 28300 GCAGCGCATTCCAGAGCCAACTGTTTGATACGATACAGCGGATCAGTCGGGTTCA-AGTT 28358 ||||| ||||| |||| ||||||||| || |||||| | | || | ||| Sbjct 426 CTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATC-GCCTTTTTTATGGTT 368 Query 28359 GTGTCCGTCTTTCAGAGCGAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACC 28418 | || || | || || |||||||||||||| || | || ||| | |||||| Sbjct 367 CAGACCATCGCGAATCGCAAACACCAGTTTCGGGAACACCGCAGTTTTACGGTTTTTACC 308 Query 28419 AAGACCAGCCAAACGAACTTTCAGGATTGCTTCTTGAATCAGTTCTGACTCCCAGCTAGT 28478 || || || | ||| |||||| | ||| |||||||| || |||||||| || Sbjct 307 GAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGATTCCCAGCTGGT 248 Query 28479 ACCAAGACCAAAGCCGAAGG-TACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGT 28537 || |||||||| || |||| |||| ||||| || ||||| || |||| |||||| |||| Sbjct 247 GCCCAGACCAAAACCAAAGGTTACA-AACGGCGTCTGACCGTTGGCGGTGTGCAGGGTGT 189 Query 28538 TGACCTCATACTCCAG 28553 | || || |||||||| Sbjct 188 TTACTTCGTACTCCAG 173 Score = 141 bits (156), Expect = 1e-28 Identities = 282/415 (68%), Gaps = 2/415 (0%) Strand=Plus/Minus Query 27252 CAAATGTTTAACACGTTTTTGCACTTCGTCCTGCTTGCCGGCATTAAATGCGCGAGAACC 27311 |||||||||||| || | ||||| |||||||| ||||| ||||||| || | | | Sbjct 1471 CAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCGGCGTTAAATGGACGTGCATC 1412 Query 27312 GGGGTTCCCCAAATAACCGCAGACGCGACGAATAACGTTCATTTTGGTATCATCATGATT 27371 ||| | || ||||| ||||| ||||| ||| | || || || | ||||| || Sbjct 1411 CGGGCTACCTAAATATCCGCACACGCGGCGAGTCACCGACACACGGGAGGCGTCATGGTT 1352 Query 27372 GCCGCACTTAGGACATTCATATCCTTTAGATGTAGCAGT-GAATTCGCCGTGATAACCGC 27430 || || || || || | ||||| | || ||| | ||| || ||| | | || | Sbjct 1351 ACCACATTTCGGGCAAGTGAAGCCTTT-GCTGGTGCACTCGAACTCACCGGTAAAGCCAC 1293 Query 27431 ATTCAAAACAAACATCAACTGGGGTATTGGTCCCATAATACGGGGTATTCCTATAAGCAT 27490 | || | || |||||| || |||||||| || |||||||| || | ||| | Sbjct 1292 ACTCGTAGCACTCATCAATCGGTGTATTGGTGCCGTAATACGGTACATGCTGATAGCTGT 1233 Query 27491 AATCCCAAACATCTTCGAGAGCTTTCAGATTATCTTTCATATTCGGATATTCACCGTATG 27550 ||||||| |||||||| || || ||||| || | | || || ||||| || ||||| Sbjct 1232 AATCCCAGACATCTTCCAGCGCCTTCAGGTTGTGCTGAATGTTTGGATACTCGCCGTAGC 1173 Query 27551 AAATAAAACCACCAGAACTAAGCGGAATGAATTGCTTTTCAAAATCGATCTTGTCATACG 27610 |||| |||||||| ||||| | | || |||||| ||||||||||| |||| Sbjct 1172 AAATGAAACCACCGTTCGCCAGCGGCGGGTAAGGCGCTTCAAAGTCGATCTTGTCGTACG 1113 Query 27611 GATTTGTATTATGACGAACGTCCAGATGGAAACTGTTGGTATAATAATCCTTATC 27665 | || || | || || || |||||||||||||| || ||| | ||||| Sbjct 1112 GGTTCACCTTCTTCTCCACATCGAGGTGGAAACTGTTGGTGTAGTAACCTTTATC 1058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710254300372160