Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq544 95.1 1e-14 >seq544 Length=37415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 230/346 (66%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 26446 CTGACCAAAGAATAAATTATCACCTAGCACAAGTGCTACA-GAATCTTCACCAATAA--- 26501 |||||| ||||| | ||||| || ||||| || ||| ||| ||||||| ||| Sbjct 9903 CTGACCGAAGAAGATGTTATCGCCCAGCACCAG----ACAAGAAGGTTCACCATTAAGGA 9958 Query 26502 AGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTTTGGGCTATCCTGTATTGCATACT 26561 || | ||||| || ||||| || | || | ||| | ||||| |||| ||||| | Sbjct 9959 AGGTTTCACCGATGATAAAGGCCTGCGCCAGACCGTCCGGGCTGGGCTGTTCGGCATATT 10018 Query 26562 GTAGGGAAATACCAAAAGAAGAACCATCACCTAGAAGATTTACAAAATTAATTTGATCTT 26621 || ||||| || | |||||| || || || |||| | || ||||| Sbjct 10019 CCAGCTGGATACCGAACTCACTACCATCGCCCAGCAGGCGCTGGAAATAACCTTTATCTT 10078 Query 26622 CTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGAT 26681 | || || || || || || ||||| | || || | ||||| || || || || |||| Sbjct 10079 CCGGCGTAGTGATGATGAGAATTTCGCGGATACCGGCCAGCATCAGCACCGACAGCGGAT 10138 Query 26682 AATAAATCATAGGTTTATCGTAAATTGGTAATAGTTGTTTACTAACCCCTTTAGTAACTG 26741 | |||||||| || ||||||||||| || || ||||| || || || |||| | Sbjct 10139 AGTAAATCATTGGCTTATCGTAAATCGGCAACAGTTGCTTCGATACGCCGCGCGTAATCG 10198 Query 26742 GGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATACCTTTCAT 26787 | | | | || || ||| || || | ||||||||||||||| Sbjct 10199 GATGCAATCGGGTGCCGGAACCGCCCGCCAGGATAATACCTTTCAT 10244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475405701390720