Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_023693.1
Length=148612
Score E
Sequences producing significant alignments: (Bits) Value
seq544 95.1 1e-14
>seq544
Length=37415
Score = 95.1 bits (104), Expect = 1e-14
Identities = 230/346 (66%), Gaps = 8/346 (2%)
Strand=Plus/Plus
Query 26446 CTGACCAAAGAATAAATTATCACCTAGCACAAGTGCTACA-GAATCTTCACCAATAA--- 26501
|||||| ||||| | ||||| || ||||| || ||| ||| ||||||| |||
Sbjct 9903 CTGACCGAAGAAGATGTTATCGCCCAGCACCAG----ACAAGAAGGTTCACCATTAAGGA 9958
Query 26502 AGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTTTGGGCTATCCTGTATTGCATACT 26561
|| | ||||| || ||||| || | || | ||| | ||||| |||| ||||| |
Sbjct 9959 AGGTTTCACCGATGATAAAGGCCTGCGCCAGACCGTCCGGGCTGGGCTGTTCGGCATATT 10018
Query 26562 GTAGGGAAATACCAAAAGAAGAACCATCACCTAGAAGATTTACAAAATTAATTTGATCTT 26621
|| ||||| || | |||||| || || || |||| | || |||||
Sbjct 10019 CCAGCTGGATACCGAACTCACTACCATCGCCCAGCAGGCGCTGGAAATAACCTTTATCTT 10078
Query 26622 CTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGAT 26681
| || || || || || || ||||| | || || | ||||| || || || || ||||
Sbjct 10079 CCGGCGTAGTGATGATGAGAATTTCGCGGATACCGGCCAGCATCAGCACCGACAGCGGAT 10138
Query 26682 AATAAATCATAGGTTTATCGTAAATTGGTAATAGTTGTTTACTAACCCCTTTAGTAACTG 26741
| |||||||| || ||||||||||| || || ||||| || || || |||| |
Sbjct 10139 AGTAAATCATTGGCTTATCGTAAATCGGCAACAGTTGCTTCGATACGCCGCGCGTAATCG 10198
Query 26742 GGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATACCTTTCAT 26787
| | | | || || ||| || || | |||||||||||||||
Sbjct 10199 GATGCAATCGGGTGCCGGAACCGCCCGCCAGGATAATACCTTTCAT 10244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475405701390720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |