Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq729 132 2e-25 seq2058 105 2e-17 >seq729 Length=25020 Score = 132 bits (146), Expect = 2e-25 Identities = 382/579 (66%), Gaps = 23/579 (4%) Strand=Plus/Minus Query 182239 CGAGCTTTACCTGATGCAAGAGACGGATTAAAACCATCACAACGTCGAATTTTATATGCT 182298 || |||||||| |||| | | || || |||||||| || ||||| |||||||||| Sbjct 4276 CGTGCTTTACCAGATGTACGGGATGGTTTAAAACCCGTTCATCGTCGGATTTTATATGGA 4217 Query 182299 TTATGGGATTTAGGAATGCTACCTCATAAACCATATCGAAAATCAGCAACAGTGAATGGC 182358 | || |||||| | || |||| || || ||| || ||| | ||| Sbjct 4216 ATGAATGAATTAGGAGTCACTCCCGATAAGCCGCATAAAAAGTCGGCACGTATCGTTGGG 4157 Query 182359 CACGTAATGGGTAATTTCCATCCACATGGTGATACT------TATGGTGTAATGGTAAAT 182412 | ||||||||||| | ||||| || ||||| | | || | ||||||| Sbjct 4156 GATGTAATGGGTAAGTATCATCCTCACGGTGACAGTGCGATTTACGAATCAATGGTACGG 4097 Query 182413 ATGACAAATGAATTAAGTATTCGATATCCAGTAGTTGATGGTCAGGGTAACTTTGGTAAC 182472 ||| | | ||| ||| || || |||| ||||| || || ||||||||| Sbjct 4096 ATGGCTCAATCATTCAGTTACCGCAATATGTTAGTAGATGGACACGGAAACTTTGGTT-- 4039 Query 182473 CCATTAGATGGTGATGGTGCAGCAGCGATGCGTTATACTGAAGCACGTTTAGATAATCTT 182532 | | ||||| ||||| || ||||||||||||||||| ||||| ||| || ||| | Sbjct 4038 -CTGTCGATGGAGATGGCGCTGCAGCGATGCGTTATACCGAAGCTCGTCTAAGTAAAATC 3980 Query 182533 GGAATGTTAATGCTACAAGATGTTGACAAAAAAGTT---GTTGACTTCCAACCTAACTAT 182589 | ||| |||||| | ||| | ||| |||| | ||||| || ||| |||||| Sbjct 3979 GCGATGGAAATGCTGCGGGATAT---CAATAAAGATACCGTTGATTTTCAAGGAAACTAT 3923 Query 182590 TCTGA-AGAAACAGAAGAACCAGTGATTTTACCAGCAGGGATTCCATACTTACTTATAAA 182648 ||| || | | |||| || ||| | ||||||||| | |||| | ||| | | || Sbjct 3922 GATGACAGTGA-ACAAGAGCCTGTGGTATTACCAGCACGTTTTCCGAATTTATTAGTGAA 3864 Query 182649 TGGAGCAACTGGTATTGCAACTGGTTATACTACTGACATACCTTCCCATAATTTAAGCGA 182708 |||||||| || |||||| |||| | || | || || | ||||||||||| || Sbjct 3863 CGGAGCAACAGGGATTGCAGTTGGTATGGCGACAAATATCCCACCTCATAATTTAAGAGA 3804 Query 182709 AGTAATTGATGGTATCTTAAAT-TTAATTCAAAATCCTGA--AATTGATATTCATGGGTT 182765 ||| | | || || | || | || || |||||||||| | || | || | ||| Sbjct 3803 AGTGACAGCCGGAAT-TGAACTATTGATGGAAAATCCTGAGGCAACGACA--CAAGAGTT 3747 Query 182766 AATGAAACACATTAAAGGTCCTGATTTACCTACTGGCGG 182804 |||| | |||| ||| || ||||| || |||||||| Sbjct 3746 AATGGAGTGCATTCCAGGACCAGATTTTCCAACTGGCGG 3708 Score = 89.7 bits (98), Expect = 2e-12 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 179568 TTAGAAGGTTTAGAAGCCGTACGAAAAAGACCAGGTATGTACATTGGTACCACAA-CACA 179626 |||||||| |||||||| || |||||| | ||||| ||||| ||||| |||| | |||| Sbjct 6330 TTAGAAGGATTAGAAGCTGTTCGAAAACGTCCAGGGATGTATATTGGCTCCACTAGCACA 6271 Query 179627 GAAGGGTGTAACTCATCTTGTTTGGGAAGCAGCAGACAATTCTATTGATGA 179677 ||||| | || || |||||||||||| | ||| ||||| |||||||| Sbjct 6270 GAAGGCTTGCAC-CACCTTGTTTGGGAAATCGTAGATAATTCCATTGATGA 6221 >seq2058 Length=4046 Score = 105 bits (116), Expect = 2e-17 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 58662 GGCTCCGTGGTGTAGCGGTTAACACGCCTGCCTGTCACGTAGGAGATCGCCGGTTCGAAT 58721 || |||||||||||| |||||||| |||||||||||||| |||||||||| ||||| ||| Sbjct 3141 GGTTCCGTGGTGTAGGGGTTAACATGCCTGCCTGTCACGCAGGAGATCGCGGGTTCAAAT 3082 Query 58722 CCGGTCGGGGCCGCCATT 58739 || |||||| |||||||| Sbjct 3081 CCCGTCGGGACCGCCATT 3064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591825632761088