Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_023719.1
Length=497513
Score E
Sequences producing significant alignments: (Bits) Value
seq729 132 2e-25
seq2058 105 2e-17
>seq729
Length=25020
Score = 132 bits (146), Expect = 2e-25
Identities = 382/579 (66%), Gaps = 23/579 (4%)
Strand=Plus/Minus
Query 182239 CGAGCTTTACCTGATGCAAGAGACGGATTAAAACCATCACAACGTCGAATTTTATATGCT 182298
|| |||||||| |||| | | || || |||||||| || ||||| ||||||||||
Sbjct 4276 CGTGCTTTACCAGATGTACGGGATGGTTTAAAACCCGTTCATCGTCGGATTTTATATGGA 4217
Query 182299 TTATGGGATTTAGGAATGCTACCTCATAAACCATATCGAAAATCAGCAACAGTGAATGGC 182358
| || |||||| | || |||| || || ||| || ||| | |||
Sbjct 4216 ATGAATGAATTAGGAGTCACTCCCGATAAGCCGCATAAAAAGTCGGCACGTATCGTTGGG 4157
Query 182359 CACGTAATGGGTAATTTCCATCCACATGGTGATACT------TATGGTGTAATGGTAAAT 182412
| ||||||||||| | ||||| || ||||| | | || | |||||||
Sbjct 4156 GATGTAATGGGTAAGTATCATCCTCACGGTGACAGTGCGATTTACGAATCAATGGTACGG 4097
Query 182413 ATGACAAATGAATTAAGTATTCGATATCCAGTAGTTGATGGTCAGGGTAACTTTGGTAAC 182472
||| | | ||| ||| || || |||| ||||| || || |||||||||
Sbjct 4096 ATGGCTCAATCATTCAGTTACCGCAATATGTTAGTAGATGGACACGGAAACTTTGGTT-- 4039
Query 182473 CCATTAGATGGTGATGGTGCAGCAGCGATGCGTTATACTGAAGCACGTTTAGATAATCTT 182532
| | ||||| ||||| || ||||||||||||||||| ||||| ||| || ||| |
Sbjct 4038 -CTGTCGATGGAGATGGCGCTGCAGCGATGCGTTATACCGAAGCTCGTCTAAGTAAAATC 3980
Query 182533 GGAATGTTAATGCTACAAGATGTTGACAAAAAAGTT---GTTGACTTCCAACCTAACTAT 182589
| ||| |||||| | ||| | ||| |||| | ||||| || ||| ||||||
Sbjct 3979 GCGATGGAAATGCTGCGGGATAT---CAATAAAGATACCGTTGATTTTCAAGGAAACTAT 3923
Query 182590 TCTGA-AGAAACAGAAGAACCAGTGATTTTACCAGCAGGGATTCCATACTTACTTATAAA 182648
||| || | | |||| || ||| | ||||||||| | |||| | ||| | | ||
Sbjct 3922 GATGACAGTGA-ACAAGAGCCTGTGGTATTACCAGCACGTTTTCCGAATTTATTAGTGAA 3864
Query 182649 TGGAGCAACTGGTATTGCAACTGGTTATACTACTGACATACCTTCCCATAATTTAAGCGA 182708
|||||||| || |||||| |||| | || | || || | ||||||||||| ||
Sbjct 3863 CGGAGCAACAGGGATTGCAGTTGGTATGGCGACAAATATCCCACCTCATAATTTAAGAGA 3804
Query 182709 AGTAATTGATGGTATCTTAAAT-TTAATTCAAAATCCTGA--AATTGATATTCATGGGTT 182765
||| | | || || | || | || || |||||||||| | || | || | |||
Sbjct 3803 AGTGACAGCCGGAAT-TGAACTATTGATGGAAAATCCTGAGGCAACGACA--CAAGAGTT 3747
Query 182766 AATGAAACACATTAAAGGTCCTGATTTACCTACTGGCGG 182804
|||| | |||| ||| || ||||| || ||||||||
Sbjct 3746 AATGGAGTGCATTCCAGGACCAGATTTTCCAACTGGCGG 3708
Score = 89.7 bits (98), Expect = 2e-12
Identities = 88/111 (79%), Gaps = 2/111 (2%)
Strand=Plus/Minus
Query 179568 TTAGAAGGTTTAGAAGCCGTACGAAAAAGACCAGGTATGTACATTGGTACCACAA-CACA 179626
|||||||| |||||||| || |||||| | ||||| ||||| ||||| |||| | ||||
Sbjct 6330 TTAGAAGGATTAGAAGCTGTTCGAAAACGTCCAGGGATGTATATTGGCTCCACTAGCACA 6271
Query 179627 GAAGGGTGTAACTCATCTTGTTTGGGAAGCAGCAGACAATTCTATTGATGA 179677
||||| | || || |||||||||||| | ||| ||||| ||||||||
Sbjct 6270 GAAGGCTTGCAC-CACCTTGTTTGGGAAATCGTAGATAATTCCATTGATGA 6221
>seq2058
Length=4046
Score = 105 bits (116), Expect = 2e-17
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 58662 GGCTCCGTGGTGTAGCGGTTAACACGCCTGCCTGTCACGTAGGAGATCGCCGGTTCGAAT 58721
|| |||||||||||| |||||||| |||||||||||||| |||||||||| ||||| |||
Sbjct 3141 GGTTCCGTGGTGTAGGGGTTAACATGCCTGCCTGTCACGCAGGAGATCGCGGGTTCAAAT 3082
Query 58722 CCGGTCGGGGCCGCCATT 58739
|| |||||| ||||||||
Sbjct 3081 CCCGTCGGGACCGCCATT 3064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1591825632761088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |