Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq215 100 3e-16 >seq215 Length=85622 Score = 100 bits (110), Expect = 3e-16 Identities = 121/161 (75%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 146415 CCGATTACAAGCACGGGGA-GCAAAACTTGTGCGAGACCATCATTAAGTTCGCGCAGGAT 146473 ||| ||| | ||||| || |||| ||| || || || || || || || ||||| || Sbjct 41091 CCGCTTATCATCACGGCGAAGCAAGCCTTATGGGA-ACTATTATAAATTTGGCGCACGAC 41033 Query 146474 TTTGTGGGCAGCAATAATATCCCCCTTCT-CTACCAGATGGGCAATTCGGAACAAGGTTG 146532 |||||||||||||| || || ||| || || || | ||| |||||||| || | ||| Sbjct 41032 TTTGTGGGCAGCAACAACGTCAACCTACTGCTGCCTGTTGGCCAATTCGGTACTCGTTTG 40973 Query 146533 GAAGGAGGGAAGGACGCTGCAAGTCCCAGATATATTTTCAC 146573 |||| || ||||| ||||| ||| | |||||||||||||| Sbjct 40972 CAAGGTGGCAAGGATGCTGCTAGTGCAAGATATATTTTCAC 40932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521518505706080