Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_024125.2 Length=168470 Score E Sequences producing significant alignments: (Bits) Value seq732 93.3 5e-14 >seq732 Length=24842 Score = 93.3 bits (102), Expect = 5e-14 Identities = 201/297 (68%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 44474 ATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTTC 44533 ||||| |||||||| | |||||||||||||| || || |||||||| || || |||||| Sbjct 447 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 388 Query 44534 GGGTCGTCTTTATAAAGATTAACACCTTCTTCAA-CGAACATAACAAGCTTAGGGAAAAT 44592 || ||| |||| | | | || | ||| || || || | | || || || ||||| | Sbjct 387 GGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCA-AACACCAGTTTCGGGAACAC 329 Query 44593 AGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 44652 | |||| | | | ||| || ||| ||||| || ||| || | || |||||| Sbjct 328 CGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAAT 269 Query 44653 CATTCG---TTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTG 44709 || || ||| |||| || ||| |||||| || |||||||| ||||| || Sbjct 268 CAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTG 212 Query 44710 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTA 44766 ||||| | | || || |||||||| || || | ||||| |||||||| Sbjct 211 ACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGTA 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538948000196800