Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq223 123 5e-23 seq52 89.7 1e-12 >seq223 Length=82600 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 82666 GTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCT 82725 |||| || ||||| |||| || || |||||||| || || || || || ||||| |||| Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552 Query 82726 TTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTG 82785 | || || |||||||| || ||||| ||| || ||||||||||| || ||||| |||| Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612 Query 82786 TCAACGTCTTTACAAATATCTGCATT 82811 ||| ||| || || |||||||||||| Sbjct 41613 TCAGCGTTTTCACGAATATCTGCATT 41638 Score = 123 bits (136), Expect = 5e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || ||||||||||||| || ||||||||||| |||||||||||||||||||| || Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || || || ||||| ||||| || || ||||||| || || || ||||| || Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||| || |||||||||||||| Sbjct 43317 AGCGTTTTCACAAATATCTGCAT 43339 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||||||||||| |||||||| || || || ||||| || ||||| || || | Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||||||||| ||||| |||||| ||||||| || || |||||||| || | Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || ||||||||||| Sbjct 42754 GTTTTCACGAATATCTGCAT 42773 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| |||| | ||||||||| || || || ||||||||||| ||||| || ||| Sbjct 42068 CCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCT 42127 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || |||||||| || || || || ||||||| ||||| || || || || || Sbjct 42128 TTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAA 42187 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || ||||| || |||||| Sbjct 42188 GTTTTCACAAAAATTTGCATT 42208 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || || | || ||||| ||||| |||||||| || || || ||||| || Sbjct 41216 CCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGGCC 41275 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || || || || ||| || ||||| | |||||| || ||||||||||| Sbjct 41276 TTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCAAT 41335 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || |||||||| |||||| Sbjct 41336 GTTTTGACAAATATTTGCATT 41356 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||| || || ||||| || | || || || || || || ||||| || ||||||||||| Sbjct 42915 TTTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTT 42974 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 | || ||||| ||||| || || || |||||||| | ||| || |||||||| || Sbjct 42975 AGTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGT 43034 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 ||| ||||| || || || |||||| Sbjct 43035 CAATGTCTTGACGAAAATTTGCATT 43059 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || |||||||| | |||||||| ||||| || ||||||||||||||||| || Sbjct 43777 CCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTC 43836 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| | ||| || || ||||| | || || || || || || | | Sbjct 43837 TTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGC 43896 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || || || ||||||||| Sbjct 43897 GTTTTCACGAAAATCTGCATT 43917 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/156 (73%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||| || || |||| || || || || || | ||||| || || ||||| || ||||| Sbjct 41771 GTCTGCT-GTCGTTTACCGGCGAAAATCAGGCGCTGTTGGTCGGGTGGTATCCCCTCCTT 41829 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||| || | ||||| || || |||||||| || || ||||||| || || Sbjct 41830 ATCTTGAATTTTCGTCTTTACGTTCTCGATCGTATCCGACGGCTCGACTTCCAGGGTGAT 41889 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | || || ||||| || ||||| Sbjct 41890 TGTTTTGCCAGTTAGAGTTTTCACAAAGATTTGCAT 41925 >seq52 Length=191592 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || || || ||||| ||||| || |||||||||| ||| ||||| ||| Sbjct 143556 ATACCCTCTTTGTCCTGTATCTTGGCTTTCACGTTTTCAATCGGGTCACATGGTTCCACT 143615 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || |||| |||||| || || |||||||| Sbjct 143616 TCCAAAGTGATTGTCTTCCCAGTCAGCGTCTTCACGAAGATCTGCAT 143662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981774918928884