Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq513 105 1e-17 >seq513 Length=39759 Score = 105 bits (116), Expect = 1e-17 Identities = 235/350 (67%), Gaps = 7/350 (2%) Strand=Plus/Minus Query 142956 CCTATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTG 143015 || || |||| |||| || || |||| | ||||||| || ||||||||| | Sbjct 16372 CCCATATATAGGGATAGTGACGAATGGAATTGTTGGAAACGCATTGGCGATCCCGTTATT 16313 Query 143016 CATATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACG 143075 || ||||| ||| | | ||||| |||| | | | |||||||| || |||| Sbjct 16312 CACATAGAGCTTCGTCGTTGGGCAGATGCCATGGTACTGGCGCCCTTGGATGCCAATAGC 16253 Query 143076 TTAGCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGG 143135 || ||||| || || ||||| | ||||| || || || |||| | || |||| ||| Sbjct 16252 TTGGCAAAGATTGCAAACGGGTTGTGCGACAACTTGCTTACATGCGTTGTTCGAGCTTGG 16193 Query 143136 GATATAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTT--ATGTGGGAACATC 143193 || | | |||||| | ||||||||||| ||||||| ||| |||||| | | Sbjct 16192 GACAGCAGTAAACCATTGTACTTTTGTCCCGCGATGAATA--CTTACATGTGGAATAGCC 16135 Query 143194 CTATTACAGAAAAACATATAGATGCTTTAAAA---CATATGGGTTTCATAGAAATAGAAT 143250 | ||| | ||||| || || |||| ||| | | | ||||| ||||| | Sbjct 16134 CGCTTATGTACAAACAAATGGACACTTTGAAAACTCTTCTTGGTTTTCGCGAAATTCCTT 16075 Query 143251 GCATAGaaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGCA 143300 ||||||| |||||||| || |||||||||| || ||| || |||||| Sbjct 16074 GCATAGAGAAAAAACTTGCTTGCGGAGACAATGGTCTTGGAGCGATGGCA 16025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903364267788160