Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq513 105 1e-17
>seq513
Length=39759
Score = 105 bits (116), Expect = 1e-17
Identities = 235/350 (67%), Gaps = 7/350 (2%)
Strand=Plus/Minus
Query 142956 CCTATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTG 143015
|| || |||| |||| || || |||| | ||||||| || ||||||||| |
Sbjct 16372 CCCATATATAGGGATAGTGACGAATGGAATTGTTGGAAACGCATTGGCGATCCCGTTATT 16313
Query 143016 CATATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACG 143075
|| ||||| ||| | | ||||| |||| | | | |||||||| || ||||
Sbjct 16312 CACATAGAGCTTCGTCGTTGGGCAGATGCCATGGTACTGGCGCCCTTGGATGCCAATAGC 16253
Query 143076 TTAGCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGG 143135
|| ||||| || || ||||| | ||||| || || || |||| | || |||| |||
Sbjct 16252 TTGGCAAAGATTGCAAACGGGTTGTGCGACAACTTGCTTACATGCGTTGTTCGAGCTTGG 16193
Query 143136 GATATAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTT--ATGTGGGAACATC 143193
|| | | |||||| | ||||||||||| ||||||| ||| |||||| | |
Sbjct 16192 GACAGCAGTAAACCATTGTACTTTTGTCCCGCGATGAATA--CTTACATGTGGAATAGCC 16135
Query 143194 CTATTACAGAAAAACATATAGATGCTTTAAAA---CATATGGGTTTCATAGAAATAGAAT 143250
| ||| | ||||| || || |||| ||| | | | ||||| ||||| |
Sbjct 16134 CGCTTATGTACAAACAAATGGACACTTTGAAAACTCTTCTTGGTTTTCGCGAAATTCCTT 16075
Query 143251 GCATAGaaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGCA 143300
||||||| |||||||| || |||||||||| || ||| || ||||||
Sbjct 16074 GCATAGAGAAAAAACTTGCTTGCGGAGACAATGGTCTTGGAGCGATGGCA 16025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903364267788160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |