Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq1622 89.7 7e-13 seq367 89.7 7e-13 seq3004 86.0 8e-12 seq2384 86.0 8e-12 seq2273 86.0 8e-12 seq1889 86.0 8e-12 seq1452 86.0 8e-12 seq314 86.0 8e-12 seq248 86.0 8e-12 seq211 86.0 8e-12 seq85 86.0 8e-12 seq69 86.0 8e-12 seq20 86.0 8e-12 >seq1622 Length=6696 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||| Sbjct 5864 TAATCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 5923 Query 8715 TTCCCCGACGAGGAGCA 8731 ||||| | || |||||| Sbjct 5924 TTCCCGGCCGCGGAGCA 5940 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 6233 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 6174 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 6173 CCGGCCGGGGAG 6162 >seq367 Length=53538 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 8126 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 8185 Query 8718 CCCGACGAGGAGCA 8731 || | || |||||| Sbjct 8186 CCGGCCGGGGAGCA 8199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 8915 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 8856 Query 8718 CCCGACGAGGAGC 8730 || | || ||||| Sbjct 8855 CCGGCCGGGGAGC 8843 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 305 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 246 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 245 CCGGCCGGGGAG 234 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 1829 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 1888 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 1889 CCGGCCGGGGAG 1900 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 7401 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 7342 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 7341 CCGGCCGGGGAG 7330 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 8484 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 8425 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 8424 CCGGCCGGGGAG 8413 Score = 82.4 bits (90), Expect = 1e-10 Identities = 71/86 (83%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 11717 TTGTGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGAC 11775 |||||||| ||||||| |||||||||||| ||||| |||| ||||| | |||| ||| Sbjct 7412 TTGTGTAAAT--GTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGAC 7355 Query 11776 CGGGGTTCGATTCCCCGACGAGGAGG 11801 | ||||||||||||| | || ||||| Sbjct 7354 CCGGGTTCGATTCCCGGCCGGGGAGG 7329 >seq3004 Length=1818 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 1511 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 1570 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 1571 CCGGCCGGGGAG 1582 >seq2384 Length=3046 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 794 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 853 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 854 CCGGCCGGGGAG 865 >seq2273 Length=3399 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 2819 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 2878 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 2879 CCGGCCGGGGAG 2890 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 3173 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 3114 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 3113 CCGGCCGGGGAG 3102 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 ||||||||| |||||||||||| ||||| |||| ||||| | |||| |||| |||||||| Sbjct 3176 CAGTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 3117 Query 11786 TTCCCCGACGAGGAGG 11801 ||||| | || ||||| Sbjct 3116 TTCCCGGCCGGGGAGG 3101 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 ||||||||| |||||||||||| ||||| |||| ||||| | |||| |||| |||||||| Sbjct 2816 CAGTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 2875 Query 11786 TTCCCCGACGAGGAG 11800 ||||| | || |||| Sbjct 2876 TTCCCGGCCGGGGAG 2890 >seq1889 Length=4748 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 2237 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 2178 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 2177 CCGGCCGGGGAG 2166 >seq1452 Length=8395 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 4571 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 4630 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 4631 CCGGCCGGGGAG 4642 >seq314 Length=61125 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 14052 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 13993 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 13992 CCGGCCGGGGAG 13981 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 ||||||||| |||||||||||| ||||| |||| ||||| | |||| |||| |||||||| Sbjct 14055 CAGTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 13996 Query 11786 TTCCCCGACGAGGAG 11800 ||||| | || |||| Sbjct 13995 TTCCCGGCCGGGGAG 13981 >seq248 Length=74676 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 7517 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 7458 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 7457 CCGGCCGGGGAG 7446 >seq211 Length=86670 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 1983 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 2042 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 2043 CCGGCCGGGGAG 2054 >seq85 Length=158702 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 1851 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 1792 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 1791 CCGGCCGGGGAG 1780 >seq69 Length=173048 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 154838 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 154897 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 154898 CCGGCCGGGGAG 154909 >seq20 Length=252424 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 113543 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 113484 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 113483 CCGGCCGGGGAG 113472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652810884712640