Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq1622 89.7 7e-13
seq367 89.7 7e-13
seq3004 86.0 8e-12
seq2384 86.0 8e-12
seq2273 86.0 8e-12
seq1889 86.0 8e-12
seq1452 86.0 8e-12
seq314 86.0 8e-12
seq248 86.0 8e-12
seq211 86.0 8e-12
seq85 86.0 8e-12
seq69 86.0 8e-12
seq20 86.0 8e-12
>seq1622
Length=6696
Score = 89.7 bits (98), Expect = 7e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714
|| |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||
Sbjct 5864 TAATCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 5923
Query 8715 TTCCCCGACGAGGAGCA 8731
||||| | || ||||||
Sbjct 5924 TTCCCGGCCGCGGAGCA 5940
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 6233 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 6174
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 6173 CCGGCCGGGGAG 6162
>seq367
Length=53538
Score = 89.7 bits (98), Expect = 7e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 8126 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 8185
Query 8718 CCCGACGAGGAGCA 8731
|| | || ||||||
Sbjct 8186 CCGGCCGGGGAGCA 8199
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 8915 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 8856
Query 8718 CCCGACGAGGAGC 8730
|| | || |||||
Sbjct 8855 CCGGCCGGGGAGC 8843
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 305 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 246
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 245 CCGGCCGGGGAG 234
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 1829 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 1888
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 1889 CCGGCCGGGGAG 1900
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 7401 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 7342
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 7341 CCGGCCGGGGAG 7330
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 8484 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 8425
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 8424 CCGGCCGGGGAG 8413
Score = 82.4 bits (90), Expect = 1e-10
Identities = 71/86 (83%), Gaps = 3/86 (3%)
Strand=Plus/Minus
Query 11717 TTGTGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGAC 11775
|||||||| ||||||| |||||||||||| ||||| |||| ||||| | |||| |||
Sbjct 7412 TTGTGTAAAT--GTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGAC 7355
Query 11776 CGGGGTTCGATTCCCCGACGAGGAGG 11801
| ||||||||||||| | || |||||
Sbjct 7354 CCGGGTTCGATTCCCGGCCGGGGAGG 7329
>seq3004
Length=1818
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 1511 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 1570
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 1571 CCGGCCGGGGAG 1582
>seq2384
Length=3046
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 794 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 853
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 854 CCGGCCGGGGAG 865
>seq2273
Length=3399
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 2819 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 2878
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 2879 CCGGCCGGGGAG 2890
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 3173 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 3114
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 3113 CCGGCCGGGGAG 3102
Score = 84.2 bits (92), Expect = 3e-11
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
||||||||| |||||||||||| ||||| |||| ||||| | |||| |||| ||||||||
Sbjct 3176 CAGTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 3117
Query 11786 TTCCCCGACGAGGAGG 11801
||||| | || |||||
Sbjct 3116 TTCCCGGCCGGGGAGG 3101
Score = 82.4 bits (90), Expect = 1e-10
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
||||||||| |||||||||||| ||||| |||| ||||| | |||| |||| ||||||||
Sbjct 2816 CAGTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 2875
Query 11786 TTCCCCGACGAGGAG 11800
||||| | || ||||
Sbjct 2876 TTCCCGGCCGGGGAG 2890
>seq1889
Length=4748
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 2237 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 2178
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 2177 CCGGCCGGGGAG 2166
>seq1452
Length=8395
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 4571 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 4630
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 4631 CCGGCCGGGGAG 4642
>seq314
Length=61125
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 14052 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 13993
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 13992 CCGGCCGGGGAG 13981
Score = 82.4 bits (90), Expect = 1e-10
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
||||||||| |||||||||||| ||||| |||| ||||| | |||| |||| ||||||||
Sbjct 14055 CAGTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 13996
Query 11786 TTCCCCGACGAGGAG 11800
||||| | || ||||
Sbjct 13995 TTCCCGGCCGGGGAG 13981
>seq248
Length=74676
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 7517 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 7458
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 7457 CCGGCCGGGGAG 7446
>seq211
Length=86670
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 1983 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 2042
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 2043 CCGGCCGGGGAG 2054
>seq85
Length=158702
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 1851 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 1792
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 1791 CCGGCCGGGGAG 1780
>seq69
Length=173048
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 154838 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 154897
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 154898 CCGGCCGGGGAG 154909
>seq20
Length=252424
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 113543 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 113484
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 113483 CCGGCCGGGGAG 113472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652810884712640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |