Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq194 109 1e-18 >seq194 Length=92744 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 || |||||||| | || || ||||| ||||||||||| |||| || | || | Sbjct 7004 TTGCAATATCACGTGGCCACTTTAATTGATAATGAAATACCTGGGATACCTCGAGCTACG 6945 Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 || | ||||||| | || || ||| | | |||| | ||||||| ||||| ||||| Sbjct 6944 CATAAATCTGGCCGGCCATTGAAGTCGCTAAAGCAAAGGCTTAAAGGCAAAGAAGGTCGC 6885 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 ||||||||||| || ||||||||| | |||||||| ||||| | ||| ||||| || Sbjct 6884 ATTCGAGGTAACCTTATGGGAAAAAGGGTTGATTTCTCAGCAAGGACTGTGATCACGCCC 6825 Query 305066 GATTCTCAAATTAGTCTTCATGAATTAGGAGTTCC 305100 ||| | | || |||| | |||| || ||||| Sbjct 6824 GATCCCAATCTTGCTCTTGACCAATTGGGTGTTCC 6790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186749603701916