Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq1011 114 3e-21 >seq1011 Length=14871 Score = 114 bits (126), Expect = 3e-21 Identities = 274/402 (68%), Gaps = 12/402 (3%) Strand=Plus/Minus Query 18142 GCATCCACGCCAATGTGCGCTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGG 18201 ||||| || |||||||| || ||||| || || |||||||| || |||||||||||||| Sbjct 10245 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 10186 Query 18202 TGCATCTCGGGGTCGCGCTTGCCGCT-GCCATTCTTGGTCGAGCTGGGCGCGGCAATCAG 18260 |||||||| || ||||| |||| ||| |||||||| |||||||| || |||| | Sbjct 10185 TGCATCTCCGGATCGCG-TTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAT 10127 Query 18261 CGAGGCGTCGACCACCGTGCCCTCTTTGAGCAGGTAGCC--CTTCGCACTGAGTTGCGCG 18318 | ||| || |||| ||||| | | | || | ||| ||||| | | ||| Sbjct 10126 GGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAG-CCAGCG-A 10069 Query 18319 TTGACCGTCTGCAGAAATTGCTCGGCCAGTTGGTGTCGCTCCAGCAAGTGCCGAAAGCGC 18378 |||| |||| | ||||| ||||||||| || |||| |||| ||| || || | Sbjct 10068 TTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAATTC 10009 Query 18379 AGAATGCTGACCCGGTCCGGCAGTCGGCTTATGC-CTCCCAGCCCCGCGAATTGCCG-AT 18436 | ||| || || |||||||| || ||| | | | || || | || || Sbjct 10008 ATGATGGTGGTGCGATCCGGCAGGGCGC-TATCCAGGGATAATCGGGCAAACAGGCGCAT 9950 Query 18437 ACAACGGC-ACGTCGTACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGC 18495 | ||| | |||||||| || |||||||| || |||| |||| | |||| ||| Sbjct 9949 GGA--GGCGATTTCGTACAGGGCATCTTCCATGGCACCGTCGCTCAGGTTGTACCAATGC 9892 Query 18496 TGCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGAAACGGC 18537 |||| |||| || |||||||| || || | ||| | ||| Sbjct 9891 TGCATGCAGTGAATACGCAGCATGGTCTCCAGCGGATAGGGC 9850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127878488565408