Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_025115.1
Length=40002
Score E
Sequences producing significant alignments: (Bits) Value
seq1011 114 3e-21
>seq1011
Length=14871
Score = 114 bits (126), Expect = 3e-21
Identities = 274/402 (68%), Gaps = 12/402 (3%)
Strand=Plus/Minus
Query 18142 GCATCCACGCCAATGTGCGCTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGG 18201
||||| || |||||||| || ||||| || || |||||||| || ||||||||||||||
Sbjct 10245 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 10186
Query 18202 TGCATCTCGGGGTCGCGCTTGCCGCT-GCCATTCTTGGTCGAGCTGGGCGCGGCAATCAG 18260
|||||||| || ||||| |||| ||| |||||||| |||||||| || |||| |
Sbjct 10185 TGCATCTCCGGATCGCG-TTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAT 10127
Query 18261 CGAGGCGTCGACCACCGTGCCCTCTTTGAGCAGGTAGCC--CTTCGCACTGAGTTGCGCG 18318
| ||| || |||| ||||| | | | || | ||| ||||| | | |||
Sbjct 10126 GGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAG-CCAGCG-A 10069
Query 18319 TTGACCGTCTGCAGAAATTGCTCGGCCAGTTGGTGTCGCTCCAGCAAGTGCCGAAAGCGC 18378
|||| |||| | ||||| ||||||||| || |||| |||| ||| || || |
Sbjct 10068 TTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAATTC 10009
Query 18379 AGAATGCTGACCCGGTCCGGCAGTCGGCTTATGC-CTCCCAGCCCCGCGAATTGCCG-AT 18436
| ||| || || |||||||| || ||| | | | || || | || ||
Sbjct 10008 ATGATGGTGGTGCGATCCGGCAGGGCGC-TATCCAGGGATAATCGGGCAAACAGGCGCAT 9950
Query 18437 ACAACGGC-ACGTCGTACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGC 18495
| ||| | |||||||| || |||||||| || |||| |||| | |||| |||
Sbjct 9949 GGA--GGCGATTTCGTACAGGGCATCTTCCATGGCACCGTCGCTCAGGTTGTACCAATGC 9892
Query 18496 TGCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGAAACGGC 18537
|||| |||| || |||||||| || || | ||| | |||
Sbjct 9891 TGCATGCAGTGAATACGCAGCATGGTCTCCAGCGGATAGGGC 9850
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127878488565408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |