Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_025414.1
Length=178171
Score E
Sequences producing significant alignments: (Bits) Value
seq732 143 3e-29
>seq732
Length=24842
Score = 143 bits (158), Expect = 3e-29
Identities = 458/714 (64%), Gaps = 41/714 (6%)
Strand=Plus/Plus
Query 154722 GATGCTTTCCAATCGTATGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACA 154781
||||| ||||| ||| || |||||||| ||||| ||||| || |||||||| || ||
Sbjct 158 GATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGACG 217
Query 154782 CCTTTCGTTACTATTACTTTCGGTACTGGTAC-----GGGAATGTTTGAACGAATGATCC 154836
|| || || || || ||| ||| || || |||||| || |||| |
Sbjct 218 CCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGGGAATCG-----CGCCTGATTC 272
Query 154837 AGAAAGCGATTCTGAAAAACCGTATTCGTGGTCTGGGTAAACAAGGTATTACCCCTGTGT 154896
|| || | || ||| |||||||| || || |||||| | ||| || | ||||
Sbjct 273 AGGAATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGT 332
Query 154897 TCCCTAAACTGGTCATGTTT---ATGGAAAAAGGTGTAAACATGAATCCTGGGGATCGTA 154953
|||| |||||||| |||| || | ||| | ||| || || |||| |
Sbjct 333 TCCCGAAACTGGT---GTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGA 389
Query 154954 ACTATGACATCAAACAATTGGCTCTGGAATGCGCTTCGAAACGTATGTACCCAGATATCA 155013
|||| ||||||||||| |||| ||||| ||||| || || ||||| || ||||||
Sbjct 390 ACTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATCC 449
Query 155014 TTA-----GTTCGGCTAATAACCGCCTTATCACTGGTTCTAGCGTTCCTGTATCTCCTAT 155068
| | | || | || | | | |||| |||| |||| | | | || ||
Sbjct 450 TGAACTACGATCAGGTAGTGAAAG-----TCACCGGTT----CGTT--TAAAACCCCGAT 498
Query 155069 GGGTTGTCGCAGTTTCCTTAATGTGTGGCATGATGATAACGGTAATGAAATTCTGGATGG 155128
||| || ||||| ||||| |||||| | |||| ||||| | | || | |||||
Sbjct 499 GGGCTGCCGCAGCTTCCTCGGCGTGTGGGAAAATGAAAACGGCGAGCAGATCCACGATGG 558
Query 155129 ACGTAATAACTTGGGTGTGGTGACAATTAACCTCCCGCGTATTGCTCTTGAAGCACANNN 155188
||||| ||| | || ||| | | | ||||| |||||||||||||| |||||| |
Sbjct 559 TCGTAACAACCTCGGCGTGATCAGCCTGAACCTGCCGCGTATTGCTCTGGAAGCAAA--- 615
Query 155189 NNNNNNNNNNNNNNNNNNNNCTTTTTGGCGTATTCTTGATGATCGTCTGGGTTTGTGTTT 155248
| || ||| | || ||||| ||||||| ||
Sbjct 616 ------AGGCGATGAAGCCACCTTCTGGAAGCTGCTGGATGAACGTCTGGTGCTGGCACG 669
Query 155249 TGAAGCCCTGATGACTCGAATTGATAGCCTACGTGGTGTTAAAGCCAGCGTTGCGCCTAT 155308
| | || |||||||| || || | | | || || || ||||| |||| || || ||
Sbjct 670 TAAGGCGCTGATGACCCGTATCGCTCGTCTCGAAGGCGTGAAAGCGCGCGTGGCCCCGAT 729
Query 155309 CCTGTACACAGAAGGTGCATTTGGTGTCCGTCTGAATCCTGATGATGAAATCCTGGAACT 155368
||| || | |||||||| | ||| || ||||| ||| |||| ||||| | ||| |
Sbjct 730 CCTCTATATGGAAGGTGCTTGTGGCGTGCGTCTCAATGCTGACGATGATGTTTCTGAAAT 789
Query 155369 GTTCAAAAATGGGCGTAGCTCTATCAGTCTGGGATACATCGGACTGCATGAAAC 155422
|||||||| || ||| ||||| ||||| |||||||| | || |||||
Sbjct 790 CTTCAAAAACGGTCGTGCGTCTATTTCGCTGGGTTACATCGGCATCCACGAAAC 843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569989587502560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |