Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_025425.1
Length=163424
Score E
Sequences producing significant alignments: (Bits) Value
seq732 104 2e-17
>seq732
Length=24842
Score = 104 bits (114), Expect = 2e-17
Identities = 294/443 (66%), Gaps = 18/443 (4%)
Strand=Plus/Minus
Query 35052 AGGGCAATACGCGGAAGATTCAGAGTAACAACACCTAAGTTATTACGTCCGTCTAATACT 35111
|| ||||||||||| || ||||| | | || || | ||| ||||| || || |
Sbjct 606 AGAGCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATC 547
Query 35112 TCTTCGCCTTTCTCATTATGCCACACACCCAGGAAGCTACGACAACCCATCGGGCTAACC 35171
| ||||| || ||||| | |||||| || |||||||| || || ||||||||| |
Sbjct 546 TGCTCGCCGTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGGGTTTTA 487
Query 35172 GGAACACTAGATCCAGTGAT----ACTACGGTTATTCTT-TGCAGAGATATAATCAGGGT 35226
||| || || |||| ||||| | || | | ||| ||||| | || |
Sbjct 486 --AAC----GAACCGGTGACTTTCACTACC-TGATCGTAGTTCAG-GATAT---CCGGAT 438
Query 35227 AAAGACGCTTACTAGAACATTCCAATGCAAGTTGCTTAATGTCGTAGTTCGGATCTTCCG 35286
| | ||||| || | || |||| || || || || ||||||||||||||||| |
Sbjct 437 ACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCTT 378
Query 35287 GTTTAAGGTTTAATCCTTCTTCTAAGAAC-ATCACCAGCTTAGGAAACACCGGAGTGATA 35345
|||| |||| | || || | || | | |||||| || || ||||||| ||| ||
Sbjct 377 TTTTATGGTTCAGACCATC-GCGAATCGCAAACACCAGTTTCGGGAACACCGCAGTTTTA 319
Query 35346 CCATCTTTACCTAAACCTTTAGTTCGAACTTTCAGGATCGCTTTCTGAATCAGTTTTTCT 35405
| | |||||| | ||| | || |||||| | || ||||||||| |
Sbjct 318 CGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGAT 259
Query 35406 TCCCAGCTAGTACCCATACCAAATGTTAAAGTCACAAAAGGTGTTTGACCGTTGGTGGAG 35465
|||||||| || |||| |||||| || || ||||| || || |||||||||| || |
Sbjct 258 TCCCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTGACCGTTGGCGGTG 199
Query 35466 AACAAAGTGTTGATTTCATATTC 35488
|| ||||| | ||| || ||
Sbjct 198 TGCAGGGTGTTTACTTCGTACTC 176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 522801639043840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |