Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_025425.1 Length=163424 Score E Sequences producing significant alignments: (Bits) Value seq732 104 2e-17 >seq732 Length=24842 Score = 104 bits (114), Expect = 2e-17 Identities = 294/443 (66%), Gaps = 18/443 (4%) Strand=Plus/Minus Query 35052 AGGGCAATACGCGGAAGATTCAGAGTAACAACACCTAAGTTATTACGTCCGTCTAATACT 35111 || ||||||||||| || ||||| | | || || | ||| ||||| || || | Sbjct 606 AGAGCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATC 547 Query 35112 TCTTCGCCTTTCTCATTATGCCACACACCCAGGAAGCTACGACAACCCATCGGGCTAACC 35171 | ||||| || ||||| | |||||| || |||||||| || || ||||||||| | Sbjct 546 TGCTCGCCGTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGGGTTTTA 487 Query 35172 GGAACACTAGATCCAGTGAT----ACTACGGTTATTCTT-TGCAGAGATATAATCAGGGT 35226 ||| || || |||| ||||| | || | | ||| ||||| | || | Sbjct 486 --AAC----GAACCGGTGACTTTCACTACC-TGATCGTAGTTCAG-GATAT---CCGGAT 438 Query 35227 AAAGACGCTTACTAGAACATTCCAATGCAAGTTGCTTAATGTCGTAGTTCGGATCTTCCG 35286 | | ||||| || | || |||| || || || || ||||||||||||||||| | Sbjct 437 ACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCTT 378 Query 35287 GTTTAAGGTTTAATCCTTCTTCTAAGAAC-ATCACCAGCTTAGGAAACACCGGAGTGATA 35345 |||| |||| | || || | || | | |||||| || || ||||||| ||| || Sbjct 377 TTTTATGGTTCAGACCATC-GCGAATCGCAAACACCAGTTTCGGGAACACCGCAGTTTTA 319 Query 35346 CCATCTTTACCTAAACCTTTAGTTCGAACTTTCAGGATCGCTTTCTGAATCAGTTTTTCT 35405 | | |||||| | ||| | || |||||| | || ||||||||| | Sbjct 318 CGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGAT 259 Query 35406 TCCCAGCTAGTACCCATACCAAATGTTAAAGTCACAAAAGGTGTTTGACCGTTGGTGGAG 35465 |||||||| || |||| |||||| || || ||||| || || |||||||||| || | Sbjct 258 TCCCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTGACCGTTGGCGGTG 199 Query 35466 AACAAAGTGTTGATTTCATATTC 35488 || ||||| | ||| || || Sbjct 198 TGCAGGGTGTTTACTTCGTACTC 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522801639043840